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dbVar

Database of genomic structural variation

nsv4386802

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:125,293

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1532 SVs from 97 studies. See in: genome view

Remapped(Score: Pass):20,412,607-20,537,899

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4386802	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	20,412,607	20,537,899
nsv4386802	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	20,575,720	20,720,705

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15624079	copy number loss	1-0291-001	SNP array	Genotyping	12
nssv15624864	copy number loss	1-0291-003	SNP array	Genotyping	26
nssv15677647	copy number loss	218118	SNP array	Genotyping	29

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15624079	Remapped	Pass	NC_000019.10:g.(?_ 20412607)_(2053789 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	20,412,607	20,537,899
nssv15624864	Remapped	Pass	NC_000019.10:g.(?_ 20412607)_(2053789 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	20,412,607	20,537,899
nssv15677647	Remapped	Pass	NC_000019.10:g.(?_ 20412607)_(2053789 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	20,412,607	20,537,899
nssv15624079	Submitted genomic		NC_000019.9:g.(?_2 0575720)_(20720705 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	20,575,720	20,720,705
nssv15624864	Submitted genomic		NC_000019.9:g.(?_2 0575720)_(20720705 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	20,575,720	20,720,705
nssv15677647	Submitted genomic		NC_000019.9:g.(?_2 0575720)_(20720705 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	20,575,720	20,720,705

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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