nsv4387761
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:17
- Validation:Not tested
- Clinical Assertions: No
- Region Size:37,935
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 680 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 680 SVs from 77 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4387761 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 122,584,580 | 122,622,514 |
| nsv4387761 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000010.10 | Chr10 | 124,344,096 | 124,382,030 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15612599 | copy number loss | 1-0121-003 | SNP array | Genotyping | 31 |
| nssv15615217 | copy number loss | 1-0755-003 | SNP array | Genotyping | 20 |
| nssv15615281 | copy number loss | 1-0766-003 | SNP array | Genotyping | 17 |
| nssv15617637 | copy number loss | 1-0834-004 | SNP array | Genotyping | 20 |
| nssv15620190 | copy number loss | 1-0952-001 | SNP array | Genotyping | 26 |
| nssv15620744 | copy number loss | 1-1000-003 | SNP array | Genotyping | 22 |
| nssv15621720 | copy number loss | 1-1009-003 | SNP array | Genotyping | 22 |
| nssv15656779 | copy number loss | 3-0600-001 | SNP array | Genotyping | 22 |
| nssv15662340 | copy number loss | 4-0082-004 | SNP array | Genotyping | 22 |
| nssv15663936 | copy number loss | 5-0143-001 | SNP array | Genotyping | 24 |
| nssv15667781 | copy number loss | 7-0073-003 | SNP array | Genotyping | 21 |
| nssv15680655 | copy number loss | 214101 | SNP array | Genotyping | 25 |
| nssv15682207 | copy number loss | 222684 | SNP array | Genotyping | 25 |
| nssv15693858 | copy number loss | OCD70-896293 | SNP array | Genotyping | 15 |
| nssv15695379 | copy number loss | 158984 | SNP array | Genotyping | 29 |
| nssv15697850 | copy number loss | 195188 | SNP array | Genotyping | 23 |
| nssv15701998 | copy number loss | 200018 | SNP array | Genotyping | 18 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15612599 | Remapped | Perfect | NC_000010.11:g.(?_ 122584580)_(122622 514_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,584,580 | 122,622,514 |
| nssv15615217 | Remapped | Perfect | NC_000010.11:g.(?_ 122584580)_(122622 514_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,584,580 | 122,622,514 |
| nssv15615281 | Remapped | Perfect | NC_000010.11:g.(?_ 122584580)_(122622 514_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,584,580 | 122,622,514 |
| nssv15617637 | Remapped | Perfect | NC_000010.11:g.(?_ 122584580)_(122622 514_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,584,580 | 122,622,514 |
| nssv15620190 | Remapped | Perfect | NC_000010.11:g.(?_ 122584580)_(122622 514_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,584,580 | 122,622,514 |
| nssv15620744 | Remapped | Perfect | NC_000010.11:g.(?_ 122584580)_(122622 514_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,584,580 | 122,622,514 |
| nssv15621720 | Remapped | Perfect | NC_000010.11:g.(?_ 122584580)_(122622 514_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,584,580 | 122,622,514 |
| nssv15656779 | Remapped | Perfect | NC_000010.11:g.(?_ 122584580)_(122622 514_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,584,580 | 122,622,514 |
| nssv15662340 | Remapped | Perfect | NC_000010.11:g.(?_ 122584580)_(122622 514_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,584,580 | 122,622,514 |
| nssv15663936 | Remapped | Perfect | NC_000010.11:g.(?_ 122584580)_(122622 514_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,584,580 | 122,622,514 |
| nssv15667781 | Remapped | Perfect | NC_000010.11:g.(?_ 122584580)_(122622 514_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,584,580 | 122,622,514 |
| nssv15680655 | Remapped | Perfect | NC_000010.11:g.(?_ 122584580)_(122622 514_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,584,580 | 122,622,514 |
| nssv15682207 | Remapped | Perfect | NC_000010.11:g.(?_ 122584580)_(122622 514_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,584,580 | 122,622,514 |
| nssv15693858 | Remapped | Perfect | NC_000010.11:g.(?_ 122584580)_(122622 514_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,584,580 | 122,622,514 |
| nssv15695379 | Remapped | Perfect | NC_000010.11:g.(?_ 122584580)_(122622 514_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,584,580 | 122,622,514 |
| nssv15697850 | Remapped | Perfect | NC_000010.11:g.(?_ 122584580)_(122622 514_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,584,580 | 122,622,514 |
| nssv15701998 | Remapped | Perfect | NC_000010.11:g.(?_ 122584580)_(122622 514_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,584,580 | 122,622,514 |
| nssv15612599 | Submitted genomic | NC_000010.10:g.(?_ 124344096)_(124382 030_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,344,096 | 124,382,030 | ||
| nssv15615217 | Submitted genomic | NC_000010.10:g.(?_ 124344096)_(124382 030_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,344,096 | 124,382,030 | ||
| nssv15615281 | Submitted genomic | NC_000010.10:g.(?_ 124344096)_(124382 030_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,344,096 | 124,382,030 | ||
| nssv15617637 | Submitted genomic | NC_000010.10:g.(?_ 124344096)_(124382 030_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,344,096 | 124,382,030 | ||
| nssv15620190 | Submitted genomic | NC_000010.10:g.(?_ 124344096)_(124382 030_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,344,096 | 124,382,030 | ||
| nssv15620744 | Submitted genomic | NC_000010.10:g.(?_ 124344096)_(124382 030_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,344,096 | 124,382,030 | ||
| nssv15621720 | Submitted genomic | NC_000010.10:g.(?_ 124344096)_(124382 030_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,344,096 | 124,382,030 | ||
| nssv15656779 | Submitted genomic | NC_000010.10:g.(?_ 124344096)_(124382 030_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,344,096 | 124,382,030 | ||
| nssv15662340 | Submitted genomic | NC_000010.10:g.(?_ 124344096)_(124382 030_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,344,096 | 124,382,030 | ||
| nssv15663936 | Submitted genomic | NC_000010.10:g.(?_ 124344096)_(124382 030_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,344,096 | 124,382,030 | ||
| nssv15667781 | Submitted genomic | NC_000010.10:g.(?_ 124344096)_(124382 030_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,344,096 | 124,382,030 | ||
| nssv15680655 | Submitted genomic | NC_000010.10:g.(?_ 124344096)_(124382 030_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,344,096 | 124,382,030 | ||
| nssv15682207 | Submitted genomic | NC_000010.10:g.(?_ 124344096)_(124382 030_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,344,096 | 124,382,030 | ||
| nssv15693858 | Submitted genomic | NC_000010.10:g.(?_ 124344096)_(124382 030_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,344,096 | 124,382,030 | ||
| nssv15695379 | Submitted genomic | NC_000010.10:g.(?_ 124344096)_(124382 030_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,344,096 | 124,382,030 | ||
| nssv15697850 | Submitted genomic | NC_000010.10:g.(?_ 124344096)_(124382 030_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,344,096 | 124,382,030 | ||
| nssv15701998 | Submitted genomic | NC_000010.10:g.(?_ 124344096)_(124382 030_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,344,096 | 124,382,030 |