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dbVar

Database of genomic structural variation

nsv4387888

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:52,613

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 273 SVs from 42 studies. See in: genome view

Remapped(Score: Perfect):106,403,413-106,456,025

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4387888	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	106,403,413	106,456,025
nsv4387888	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000006.11	Chr6	106,851,288	106,903,900

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15637987	copy number loss	14-0056-004	SNP array	Genotyping	21
nssv15638285	copy number loss	14-0056-002	SNP array	Genotyping	23

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15637987	Remapped	Perfect	NC_000006.12:g.(?_ 106403413)_(106456 025_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	106,403,413	106,456,025
nssv15638285	Remapped	Perfect	NC_000006.12:g.(?_ 106403413)_(106456 025_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	106,403,413	106,456,025
nssv15637987	Submitted genomic		NC_000006.11:g.(?_ 106851288)_(106903 900_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	106,851,288	106,903,900
nssv15638285	Submitted genomic		NC_000006.11:g.(?_ 106851288)_(106903 900_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	106,851,288	106,903,900

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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