Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv4388400

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:8
Validation:Not tested
Clinical Assertions: No
Region Size:32,053

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 198 SVs from 38 studies. See in: genome view

Remapped(Score: Perfect):223,683,151-223,715,203

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4388400	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	223,683,151	223,715,203
nsv4388400	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000002.11	Chr2	224,547,868	224,579,920

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15616599	copy number loss	1-0862-004	SNP array	Genotyping	25
nssv15618315	copy number loss	1-0862-003	SNP array	Genotyping	23
nssv15622864	copy number loss	1-0231-003	SNP array	Genotyping	21
nssv15642537	copy number loss	15-1131-004	SNP array	Genotyping	20
nssv15642984	copy number loss	15-1131-002	SNP array	Genotyping	21
nssv15666621	copy number loss	7-0125-003	SNP array	Genotyping	25
nssv15671901	copy number loss	9-0019-003	SNP array	Genotyping	20
nssv15672984	copy number loss	9-0019-002	SNP array	Genotyping	27

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15616599	Remapped	Perfect	NC_000002.12:g.(?_ 223683151)_(223715 203_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	223,683,151	223,715,203
nssv15618315	Remapped	Perfect	NC_000002.12:g.(?_ 223683151)_(223715 203_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	223,683,151	223,715,203
nssv15622864	Remapped	Perfect	NC_000002.12:g.(?_ 223683151)_(223715 203_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	223,683,151	223,715,203
nssv15642537	Remapped	Perfect	NC_000002.12:g.(?_ 223683151)_(223715 203_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	223,683,151	223,715,203
nssv15642984	Remapped	Perfect	NC_000002.12:g.(?_ 223683151)_(223715 203_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	223,683,151	223,715,203
nssv15666621	Remapped	Perfect	NC_000002.12:g.(?_ 223683151)_(223715 203_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	223,683,151	223,715,203
nssv15671901	Remapped	Perfect	NC_000002.12:g.(?_ 223683151)_(223715 203_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	223,683,151	223,715,203
nssv15672984	Remapped	Perfect	NC_000002.12:g.(?_ 223683151)_(223715 203_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	223,683,151	223,715,203
nssv15616599	Submitted genomic		NC_000002.11:g.(?_ 224547868)_(224579 920_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	224,547,868	224,579,920
nssv15618315	Submitted genomic		NC_000002.11:g.(?_ 224547868)_(224579 920_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	224,547,868	224,579,920
nssv15622864	Submitted genomic		NC_000002.11:g.(?_ 224547868)_(224579 920_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	224,547,868	224,579,920
nssv15642537	Submitted genomic		NC_000002.11:g.(?_ 224547868)_(224579 920_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	224,547,868	224,579,920
nssv15642984	Submitted genomic		NC_000002.11:g.(?_ 224547868)_(224579 920_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	224,547,868	224,579,920
nssv15666621	Submitted genomic		NC_000002.11:g.(?_ 224547868)_(224579 920_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	224,547,868	224,579,920
nssv15671901	Submitted genomic		NC_000002.11:g.(?_ 224547868)_(224579 920_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	224,547,868	224,579,920
nssv15672984	Submitted genomic		NC_000002.11:g.(?_ 224547868)_(224579 920_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	224,547,868	224,579,920

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI