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dbVar

Database of genomic structural variation

nsv4388431

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:39,404

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 389 SVs from 51 studies. See in: genome view

Remapped(Score: Perfect):111,081,162-111,120,565

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4388431	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	111,081,162	111,120,565
nsv4388431	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	110,416,860	110,456,263

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15620714	copy number gain	1-0993-003	SNP array	Genotyping	21
nssv15650484	copy number gain	2-1485-003	SNP array	Genotyping	16
nssv15651757	copy number gain	2-1568-002	SNP array	Genotyping	25
nssv15668882	copy number gain	7-0232-004	SNP array	Genotyping	18
nssv15674505	copy number gain	9-0044-001	SNP array	Genotyping	19
nssv15699067	copy number gain	178076	SNP array	Genotyping	15

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15620714	Remapped	Perfect	NC_000005.10:g.(?_ 111081162)_(111120 565_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	111,081,162	111,120,565
nssv15650484	Remapped	Perfect	NC_000005.10:g.(?_ 111081162)_(111120 565_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	111,081,162	111,120,565
nssv15651757	Remapped	Perfect	NC_000005.10:g.(?_ 111081162)_(111120 565_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	111,081,162	111,120,565
nssv15668882	Remapped	Perfect	NC_000005.10:g.(?_ 111081162)_(111120 565_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	111,081,162	111,120,565
nssv15674505	Remapped	Perfect	NC_000005.10:g.(?_ 111081162)_(111120 565_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	111,081,162	111,120,565
nssv15699067	Remapped	Perfect	NC_000005.10:g.(?_ 111081162)_(111120 565_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	111,081,162	111,120,565
nssv15620714	Submitted genomic		NC_000005.9:g.(?_1 10416860)_(1104562 63_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	110,416,860	110,456,263
nssv15650484	Submitted genomic		NC_000005.9:g.(?_1 10416860)_(1104562 63_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	110,416,860	110,456,263
nssv15651757	Submitted genomic		NC_000005.9:g.(?_1 10416860)_(1104562 63_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	110,416,860	110,456,263
nssv15668882	Submitted genomic		NC_000005.9:g.(?_1 10416860)_(1104562 63_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	110,416,860	110,456,263
nssv15674505	Submitted genomic		NC_000005.9:g.(?_1 10416860)_(1104562 63_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	110,416,860	110,456,263
nssv15699067	Submitted genomic		NC_000005.9:g.(?_1 10416860)_(1104562 63_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	110,416,860	110,456,263

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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