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dbVar

Database of genomic structural variation

nsv4388533

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:96,452

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 707 SVs from 83 studies. See in: genome view

Remapped(Score: Perfect):43,596,281-43,692,732

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4388533	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	43,596,281	43,692,732
nsv4388533	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000015.9	Chr15	43,888,479	43,984,930

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15645859	copy number loss	2-0285-001	SNP array	Genotyping	19
nssv15676233	copy number loss	166105	SNP array	Genotyping	21

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15645859	Remapped	Perfect	NC_000015.10:g.(?_ 43596281)_(4369273 2_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	43,596,281	43,692,732
nssv15676233	Remapped	Perfect	NC_000015.10:g.(?_ 43596281)_(4369273 2_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	43,596,281	43,692,732
nssv15645859	Submitted genomic		NC_000015.9:g.(?_4 3888479)_(43984930 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	43,888,479	43,984,930
nssv15676233	Submitted genomic		NC_000015.9:g.(?_4 3888479)_(43984930 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	43,888,479	43,984,930

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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