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dbVar

Database of genomic structural variation

nsv441705

Organism: Homo sapiens

Study:nstd22 (McCarroll et al. 2008)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:46,730

Publication(s):McCarroll et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 370 SVs from 72 studies. See in: genome view

Remapped(Score: Perfect):105,625,674-105,672,403

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv441705	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	105,625,674	105,672,403
nsv441705	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	106,168,296	106,215,025
nsv441705	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000001.8	Chr1	105,880,317	105,927,046

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv1656704	copy number loss	NA18521	SNP array	Probe signal intensity	1	174
nssv1656705	copy number loss	NA18522	SNP array	Probe signal intensity	1	172
nssv1656706	copy number loss	NA18852	SNP array	Probe signal intensity	1	177
nssv1656707	copy number loss	NA19102	SNP array	Probe signal intensity	1	173
nssv1656708	copy number loss	NA19103	SNP array	Probe signal intensity	1	172
nssv1656709	copy number loss	NA19127	SNP array	Probe signal intensity	1	175

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1656704	Remapped	Perfect	NC_000001.11:g.(?_ 105625674)_(105672 403_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	105,625,674	105,672,403
nssv1656705	Remapped	Perfect	NC_000001.11:g.(?_ 105625674)_(105672 403_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	105,625,674	105,672,403
nssv1656706	Remapped	Perfect	NC_000001.11:g.(?_ 105625674)_(105672 403_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	105,625,674	105,672,403
nssv1656707	Remapped	Perfect	NC_000001.11:g.(?_ 105625674)_(105672 403_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	105,625,674	105,672,403
nssv1656708	Remapped	Perfect	NC_000001.11:g.(?_ 105625674)_(105672 403_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	105,625,674	105,672,403
nssv1656709	Remapped	Perfect	NC_000001.11:g.(?_ 105625674)_(105672 403_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	105,625,674	105,672,403
nssv1656704	Remapped	Perfect	NC_000001.10:g.(?_ 106168296)_(106215 025_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	106,168,296	106,215,025
nssv1656705	Remapped	Perfect	NC_000001.10:g.(?_ 106168296)_(106215 025_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	106,168,296	106,215,025
nssv1656706	Remapped	Perfect	NC_000001.10:g.(?_ 106168296)_(106215 025_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	106,168,296	106,215,025
nssv1656707	Remapped	Perfect	NC_000001.10:g.(?_ 106168296)_(106215 025_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	106,168,296	106,215,025
nssv1656708	Remapped	Perfect	NC_000001.10:g.(?_ 106168296)_(106215 025_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	106,168,296	106,215,025
nssv1656709	Remapped	Perfect	NC_000001.10:g.(?_ 106168296)_(106215 025_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	106,168,296	106,215,025
nssv1656704	Submitted genomic		NC_000001.8:g.(?_1 05880317)_(1059270 46_?)del	NCBI35 (hg17)		NC_000001.8	Chr1	105,880,317	105,927,046
nssv1656705	Submitted genomic		NC_000001.8:g.(?_1 05880317)_(1059270 46_?)del	NCBI35 (hg17)		NC_000001.8	Chr1	105,880,317	105,927,046
nssv1656706	Submitted genomic		NC_000001.8:g.(?_1 05880317)_(1059270 46_?)del	NCBI35 (hg17)		NC_000001.8	Chr1	105,880,317	105,927,046
nssv1656707	Submitted genomic		NC_000001.8:g.(?_1 05880317)_(1059270 46_?)del	NCBI35 (hg17)		NC_000001.8	Chr1	105,880,317	105,927,046
nssv1656708	Submitted genomic		NC_000001.8:g.(?_1 05880317)_(1059270 46_?)del	NCBI35 (hg17)		NC_000001.8	Chr1	105,880,317	105,927,046
nssv1656709	Submitted genomic		NC_000001.8:g.(?_1 05880317)_(1059270 46_?)del	NCBI35 (hg17)		NC_000001.8	Chr1	105,880,317	105,927,046

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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