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dbVar

Database of genomic structural variation

nsv441792

Organism: Homo sapiens

Study:nstd22 (McCarroll et al. 2008)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:126,599

Publication(s):McCarroll et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 644 SVs from 73 studies. See in: genome view

Remapped(Score: Perfect):152,813,672-152,940,270

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv441792	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	152,813,672	152,940,270
nsv441792	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	153,670,186	153,796,784
nsv441792	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000002.9	Chr2	153,495,694	153,622,292

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv1657140	copy number loss	NA18608	SNP array	Probe signal intensity	1	159
nssv1657141	copy number loss	NA18956	SNP array	Probe signal intensity	1	156

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1657140	Remapped	Perfect	NC_000002.12:g.(?_ 152813672)_(152940 270_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	152,813,672	152,940,270
nssv1657141	Remapped	Perfect	NC_000002.12:g.(?_ 152813672)_(152940 270_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	152,813,672	152,940,270
nssv1657140	Remapped	Perfect	NC_000002.11:g.(?_ 153670186)_(153796 784_?)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	153,670,186	153,796,784
nssv1657141	Remapped	Perfect	NC_000002.11:g.(?_ 153670186)_(153796 784_?)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	153,670,186	153,796,784
nssv1657140	Submitted genomic		NC_000002.9:g.(?_1 53495694)_(1536222 92_?)del	NCBI35 (hg17)		NC_000002.9	Chr2	153,495,694	153,622,292
nssv1657141	Submitted genomic		NC_000002.9:g.(?_1 53495694)_(1536222 92_?)del	NCBI35 (hg17)		NC_000002.9	Chr2	153,495,694	153,622,292

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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