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dbVar

Database of genomic structural variation

nsv441822

Organism: Homo sapiens

Study:nstd22 (McCarroll et al. 2008)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:8,349

Publication(s):McCarroll et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 174 SVs from 48 studies. See in: genome view

Remapped(Score: Perfect):41,738,655-41,747,003

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv441822	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	41,738,655	41,747,003
nsv441822	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	41,780,147	41,788,495
nsv441822	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000003.9	Chr3	41,755,151	41,763,499

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv1657268	copy number loss	NA18521	SNP array	Probe signal intensity	1	174
nssv1657269	copy number loss	NA18522	SNP array	Probe signal intensity	1	172
nssv1657270	copy number loss	NA18871	SNP array	Probe signal intensity	1	174
nssv1657271	copy number loss	NA19098	SNP array	Probe signal intensity	1	174
nssv1657272	copy number loss	NA19140	SNP array	Probe signal intensity	1	182

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1657268	Remapped	Perfect	NC_000003.12:g.(?_ 41738655)_(4174700 3_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	41,738,655	41,747,003
nssv1657269	Remapped	Perfect	NC_000003.12:g.(?_ 41738655)_(4174700 3_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	41,738,655	41,747,003
nssv1657270	Remapped	Perfect	NC_000003.12:g.(?_ 41738655)_(4174700 3_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	41,738,655	41,747,003
nssv1657271	Remapped	Perfect	NC_000003.12:g.(?_ 41738655)_(4174700 3_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	41,738,655	41,747,003
nssv1657272	Remapped	Perfect	NC_000003.12:g.(?_ 41738655)_(4174700 3_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	41,738,655	41,747,003
nssv1657268	Remapped	Perfect	NC_000003.11:g.(?_ 41780147)_(4178849 5_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	41,780,147	41,788,495
nssv1657269	Remapped	Perfect	NC_000003.11:g.(?_ 41780147)_(4178849 5_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	41,780,147	41,788,495
nssv1657270	Remapped	Perfect	NC_000003.11:g.(?_ 41780147)_(4178849 5_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	41,780,147	41,788,495
nssv1657271	Remapped	Perfect	NC_000003.11:g.(?_ 41780147)_(4178849 5_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	41,780,147	41,788,495
nssv1657272	Remapped	Perfect	NC_000003.11:g.(?_ 41780147)_(4178849 5_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	41,780,147	41,788,495
nssv1657268	Submitted genomic		NC_000003.9:g.(?_4 1755151)_(41763499 _?)del	NCBI35 (hg17)		NC_000003.9	Chr3	41,755,151	41,763,499
nssv1657269	Submitted genomic		NC_000003.9:g.(?_4 1755151)_(41763499 _?)del	NCBI35 (hg17)		NC_000003.9	Chr3	41,755,151	41,763,499
nssv1657270	Submitted genomic		NC_000003.9:g.(?_4 1755151)_(41763499 _?)del	NCBI35 (hg17)		NC_000003.9	Chr3	41,755,151	41,763,499
nssv1657271	Submitted genomic		NC_000003.9:g.(?_4 1755151)_(41763499 _?)del	NCBI35 (hg17)		NC_000003.9	Chr3	41,755,151	41,763,499
nssv1657272	Submitted genomic		NC_000003.9:g.(?_4 1755151)_(41763499 _?)del	NCBI35 (hg17)		NC_000003.9	Chr3	41,755,151	41,763,499

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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