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dbVar

Database of genomic structural variation

nsv441865

Organism: Homo sapiens

Study:nstd22 (McCarroll et al. 2008)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:88,492

Publication(s):McCarroll et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 407 SVs from 58 studies. See in: genome view

Remapped(Score: Perfect):28,640,711-28,729,202

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv441865	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	28,640,711	28,729,202
nsv441865	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	28,642,333	28,730,824
nsv441865	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000004.9	Chr4	28,318,602	28,407,093

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv1657465	copy number loss	NA18956	SNP array	Probe signal intensity	1	156
nssv1657466	copy number loss	NA18959	SNP array	Probe signal intensity	1	165

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1657465	Remapped	Perfect	NC_000004.12:g.(?_ 28640711)_(2872920 2_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	28,640,711	28,729,202
nssv1657466	Remapped	Perfect	NC_000004.12:g.(?_ 28640711)_(2872920 2_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	28,640,711	28,729,202
nssv1657465	Remapped	Perfect	NC_000004.11:g.(?_ 28642333)_(2873082 4_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	28,642,333	28,730,824
nssv1657466	Remapped	Perfect	NC_000004.11:g.(?_ 28642333)_(2873082 4_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	28,642,333	28,730,824
nssv1657465	Submitted genomic		NC_000004.9:g.(?_2 8318602)_(28407093 _?)del	NCBI35 (hg17)		NC_000004.9	Chr4	28,318,602	28,407,093
nssv1657466	Submitted genomic		NC_000004.9:g.(?_2 8318602)_(28407093 _?)del	NCBI35 (hg17)		NC_000004.9	Chr4	28,318,602	28,407,093

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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