nsv442085
- Organism: Homo sapiens
- Study:nstd22 (McCarroll et al. 2008)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:24
- Validation:Not tested
- Clinical Assertions: No
- Region Size:6,770
- Publication(s):McCarroll et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 273 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 273 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 8 SVs from 4 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv442085 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nsv442085 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nsv442085 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv1634087 | copy number loss | NA07034 | SNP array | Probe signal intensity | 1 | 143 |
| nssv1634088 | copy number loss | NA10861 | SNP array | Probe signal intensity | 1 | 161 |
| nssv1634089 | copy number loss | NA18506 | SNP array | Probe signal intensity | 1 | 190 |
| nssv1634090 | copy number loss | NA18508 | SNP array | Probe signal intensity | 1 | 192 |
| nssv1634091 | copy number loss | NA18592 | SNP array | Probe signal intensity | 1 | 153 |
| nssv1634092 | copy number loss | NA18853 | SNP array | Probe signal intensity | 1 | 172 |
| nssv1634093 | copy number loss | NA18859 | SNP array | Probe signal intensity | 1 | 166 |
| nssv1634094 | copy number loss | NA18860 | SNP array | Probe signal intensity | 1 | 167 |
| nssv1634095 | copy number loss | NA18861 | SNP array | Probe signal intensity | 1 | 171 |
| nssv1634096 | copy number loss | NA18870 | SNP array | Probe signal intensity | 1 | 192 |
| nssv1634097 | copy number loss | NA18872 | SNP array | Probe signal intensity | 1 | 180 |
| nssv1634098 | copy number loss | NA19116 | SNP array | Probe signal intensity | 1 | 177 |
| nssv1634099 | copy number loss | NA19120 | SNP array | Probe signal intensity | 1 | 179 |
| nssv1634100 | copy number loss | NA19138 | SNP array | Probe signal intensity | 1 | 154 |
| nssv1634101 | copy number loss | NA19140 | SNP array | Probe signal intensity | 1 | 182 |
| nssv1634102 | copy number loss | NA19143 | SNP array | Probe signal intensity | 1 | 183 |
| nssv1634103 | copy number loss | NA19193 | SNP array | Probe signal intensity | 0 | 180 |
| nssv1634104 | copy number loss | NA19194 | SNP array | Probe signal intensity | 1 | 176 |
| nssv1634105 | copy number loss | NA19200 | SNP array | Probe signal intensity | 1 | 184 |
| nssv1634106 | copy number loss | NA19206 | SNP array | Probe signal intensity | 1 | 185 |
| nssv1634107 | copy number loss | NA19209 | SNP array | Probe signal intensity | 1 | 190 |
| nssv1634108 | copy number loss | NA19211 | SNP array | Probe signal intensity | 1 | 169 |
| nssv1634109 | copy number loss | NA19221 | SNP array | Probe signal intensity | 1 | 185 |
| nssv1634110 | copy number loss | NA19222 | SNP array | Probe signal intensity | 1 | 182 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1634087 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634088 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634089 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634090 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634091 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634092 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634093 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634094 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634095 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634096 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634097 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634098 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634099 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634100 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634101 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634102 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634103 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634104 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634105 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634106 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634107 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634108 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634109 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634110 | Remapped | Perfect | NC_000007.14:g.(?_ 102711399)_(102718 168_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,711,399 | 102,718,168 |
| nssv1634087 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634088 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634089 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634090 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634091 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634092 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634093 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634094 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634095 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634096 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634097 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634098 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634099 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634100 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634101 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634102 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634103 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634104 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634105 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634106 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634107 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634108 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634109 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634110 | Remapped | Perfect | NC_000007.13:g.(?_ 102351846)_(102358 615_?)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,351,846 | 102,358,615 |
| nssv1634087 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634088 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634089 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634090 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634091 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634092 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634093 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634094 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634095 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634096 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634097 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634098 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634099 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634100 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634101 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634102 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634103 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634104 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634105 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634106 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634107 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634108 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634109 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 | ||
| nssv1634110 | Submitted genomic | NC_000007.11:g.(?_ 101945797)_(101952 566_?)del | NCBI35 (hg17) | NC_000007.11 | Chr7 | 101,945,797 | 101,952,566 |