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dbVar

Database of genomic structural variation

nsv442140

Organism: Homo sapiens

Study:nstd22 (McCarroll et al. 2008)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:5,158

Publication(s):McCarroll et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 276 SVs from 45 studies. See in: genome view

Remapped(Score: Perfect):26,713,322-26,718,479

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv442140	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000009.12	Chr9	26,713,322	26,718,479
nsv442140	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000009.11	Chr9	26,713,320	26,718,477
nsv442140	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000009.9	Chr9	26,703,320	26,708,477

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv1658813	copy number loss	NA18545	SNP array	Probe signal intensity	1	157
nssv1658814	copy number loss	NA18991	SNP array	Probe signal intensity	1	169

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1658813	Remapped	Perfect	NC_000009.12:g.(?_ 26713322)_(2671847 9_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	26,713,322	26,718,479
nssv1658814	Remapped	Perfect	NC_000009.12:g.(?_ 26713322)_(2671847 9_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	26,713,322	26,718,479
nssv1658813	Remapped	Perfect	NC_000009.11:g.(?_ 26713320)_(2671847 7_?)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	26,713,320	26,718,477
nssv1658814	Remapped	Perfect	NC_000009.11:g.(?_ 26713320)_(2671847 7_?)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	26,713,320	26,718,477
nssv1658813	Submitted genomic		NC_000009.9:g.(?_2 6703320)_(26708477 _?)del	NCBI35 (hg17)		NC_000009.9	Chr9	26,703,320	26,708,477
nssv1658814	Submitted genomic		NC_000009.9:g.(?_2 6703320)_(26708477 _?)del	NCBI35 (hg17)		NC_000009.9	Chr9	26,703,320	26,708,477

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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