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dbVar

Database of genomic structural variation

nsv442396

Organism: Homo sapiens

Study:nstd22 (McCarroll et al. 2008)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:37,411

Publication(s):McCarroll et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 357 SVs from 56 studies. See in: genome view

Remapped(Score: Perfect):35,787,547-35,824,957

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv442396	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	35,787,547	35,824,957
nsv442396	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	35,021,918	35,059,328
nsv442396	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000016.8	Chr16	34,879,419	34,916,829

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv1660084	copy number gain	NA18562	SNP array	Probe signal intensity	3	168
nssv1660085	copy number gain	NA18573	SNP array	Probe signal intensity	3	148

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1660084	Remapped	Perfect	NC_000016.10:g.(?_ 35787547)_(3582495 7_?)dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	35,787,547	35,824,957
nssv1660085	Remapped	Perfect	NC_000016.10:g.(?_ 35787547)_(3582495 7_?)dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	35,787,547	35,824,957
nssv1660084	Remapped	Perfect	NC_000016.9:g.(?_3 5021918)_(35059328 _?)dup	GRCh37.p13	First Pass	NC_000016.9	Chr16	35,021,918	35,059,328
nssv1660085	Remapped	Perfect	NC_000016.9:g.(?_3 5021918)_(35059328 _?)dup	GRCh37.p13	First Pass	NC_000016.9	Chr16	35,021,918	35,059,328
nssv1660084	Submitted genomic		NC_000016.8:g.(?_3 4879419)_(34916829 _?)dup	NCBI35 (hg17)		NC_000016.8	Chr16	34,879,419	34,916,829
nssv1660085	Submitted genomic		NC_000016.8:g.(?_3 4879419)_(34916829 _?)dup	NCBI35 (hg17)		NC_000016.8	Chr16	34,879,419	34,916,829

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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