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dbVar

Database of genomic structural variation

nsv4434617

Organism: Homo sapiens

Study:nstd172 (Deng et al. 2019)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:8
Validation:Not tested
Clinical Assertions: No
Region Size:95,000

Publication(s):Deng et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 855 SVs from 82 studies. See in: genome view

Remapped(Score: Perfect):21,477,892-21,572,891

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv4434617	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	21,477,892	21,572,891
nsv4434617	Submitted genomic		GRCh37.p13	Primary Assembly		NC_000005.9	Chr5	21,478,001	21,573,000

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15746391	duplication	NB09	Sequencing	Sequence alignment	582
nssv15747157	duplication	SMI018	Sequencing	Sequence alignment	551
nssv15747305	duplication	NB07	Sequencing	Sequence alignment	571
nssv15749252	duplication	NB12	Sequencing	Sequence alignment	599
nssv15751172	duplication	NB08	Sequencing	Sequence alignment	574
nssv15753443	duplication	BTQ038	Sequencing	Sequence alignment	561
nssv15753533	duplication	NB10	Sequencing	Sequence alignment	582
nssv15754545	duplication	BTQ055	Sequencing	Sequence alignment	565

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv15746391	Remapped	Perfect	NC_000005.10:g.214 77892_21572891dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	21,477,892	21,572,891
nssv15747157	Remapped	Perfect	NC_000005.10:g.214 77892_21572891dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	21,477,892	21,572,891
nssv15747305	Remapped	Perfect	NC_000005.10:g.214 77892_21572891dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	21,477,892	21,572,891
nssv15749252	Remapped	Perfect	NC_000005.10:g.214 77892_21572891dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	21,477,892	21,572,891
nssv15751172	Remapped	Perfect	NC_000005.10:g.214 77892_21572891dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	21,477,892	21,572,891
nssv15753443	Remapped	Perfect	NC_000005.10:g.214 77892_21572891dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	21,477,892	21,572,891
nssv15753533	Remapped	Perfect	NC_000005.10:g.214 77892_21572891dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	21,477,892	21,572,891
nssv15754545	Remapped	Perfect	NC_000005.10:g.214 77892_21572891dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	21,477,892	21,572,891
nssv15746391	Submitted genomic		NC_000005.9:g.2147 8001_21573000dup	GRCh37.p13		NC_000005.9	Chr5	21,478,001	21,573,000
nssv15747157	Submitted genomic		NC_000005.9:g.2147 8001_21573000dup	GRCh37.p13		NC_000005.9	Chr5	21,478,001	21,573,000
nssv15747305	Submitted genomic		NC_000005.9:g.2147 8001_21573000dup	GRCh37.p13		NC_000005.9	Chr5	21,478,001	21,573,000
nssv15749252	Submitted genomic		NC_000005.9:g.2147 8001_21573000dup	GRCh37.p13		NC_000005.9	Chr5	21,478,001	21,573,000
nssv15751172	Submitted genomic		NC_000005.9:g.2147 8001_21573000dup	GRCh37.p13		NC_000005.9	Chr5	21,478,001	21,573,000
nssv15753443	Submitted genomic		NC_000005.9:g.2147 8001_21573000dup	GRCh37.p13		NC_000005.9	Chr5	21,478,001	21,573,000
nssv15753533	Submitted genomic		NC_000005.9:g.2147 8001_21573000dup	GRCh37.p13		NC_000005.9	Chr5	21,478,001	21,573,000
nssv15754545	Submitted genomic		NC_000005.9:g.2147 8001_21573000dup	GRCh37.p13		NC_000005.9	Chr5	21,478,001	21,573,000

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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