nsv4453518
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:673,904
- Description:GRCh37/hg19 3p21.2-21.1(chr3:52195134-52869037)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1533 SVs from 80 studies. See in: genome view
Overlapping variant regions from other studies: 1533 SVs from 80 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4453518 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 52,161,118 | 52,835,021 |
| nsv4453518 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 52,195,134 | 52,869,037 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15772851 | copy number loss | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV000848455.2, VCV000687764.2 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15772851 | Remapped | Perfect | NC_000003.12:g.(?_ 52161118)_(5283502 1_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 52,161,118 | 52,835,021 |
| nssv15772851 | Submitted genomic | NC_000003.11:g.(?_ 52195134)_(5286903 7_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 52,195,134 | 52,869,037 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15772851 | GRCh37: NC_000003.11:g.(?_52195134)_(52869037_?)del | copy number loss | unknown | not provided | Pathogenic | ClinVar | RCV000848455.2, VCV000687764.2 | 1 |