nsv455896
- Organism: Homo sapiens
- Study:nstd27 (Itsara et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:275,725
- Publication(s):Itsara et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1016 SVs from 80 studies. See in: genome view
Overlapping variant regions from other studies: 1016 SVs from 80 studies. See in: genome view
Overlapping variant regions from other studies: 32 SVs from 9 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv455896 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000013.11 | Chr13 | 56,853,988 | 57,129,712 |
| nsv455896 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000013.10 | Chr13 | 57,428,122 | 57,703,846 |
| nsv455896 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000013.9 | Chr13 | 56,326,123 | 56,601,847 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv634446 | copy number gain | SNP array | SNP genotyping analysis | 3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv634446 | Remapped | Perfect | NC_000013.11:g.(?_ 56853988)_(5712971 2_?)dup | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 56,853,988 | 57,129,712 |
| nssv634446 | Remapped | Perfect | NC_000013.10:g.(?_ 57428122)_(5770384 6_?)dup | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 57,428,122 | 57,703,846 |
| nssv634446 | Submitted genomic | NC_000013.9:g.(?_5 6326123)_(56601847 _?)dup | NCBI35 (hg17) | NC_000013.9 | Chr13 | 56,326,123 | 56,601,847 |