nsv455916
- Organism: Homo sapiens
- Study:nstd27 (Itsara et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:482,200
- Publication(s):Itsara et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1433 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 1433 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 54 SVs from 8 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv455916 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000013.11 | Chr13 | 65,336,660 | 65,818,859 |
| nsv455916 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000013.10 | Chr13 | 65,910,792 | 66,392,991 |
| nsv455916 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000013.9 | Chr13 | 64,808,793 | 65,290,992 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv533368 | copy number gain | 1780862162_A | SNP array | SNP genotyping analysis | 3 | 9 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv533368 | Remapped | Perfect | NC_000013.11:g.(?_ 65336660)_(6581885 9_?)dup | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 65,336,660 | 65,818,859 |
| nssv533368 | Remapped | Perfect | NC_000013.10:g.(?_ 65910792)_(6639299 1_?)dup | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 65,910,792 | 66,392,991 |
| nssv533368 | Submitted genomic | NC_000013.9:g.(?_6 4808793)_(65290992 _?)dup | NCBI35 (hg17) | NC_000013.9 | Chr13 | 64,808,793 | 65,290,992 |