nsv457366
- Organism: Homo sapiens
- Study:nstd27 (Itsara et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:304,619
- Publication(s):Itsara et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1385 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 1385 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 104 SVs from 8 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv457366 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 6,346,947 | 6,651,565 |
nsv457366 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 6,396,948 | 6,701,566 |
nsv457366 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000016.8 | Chr16 | 6,336,949 | 6,641,567 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
---|---|---|---|---|---|---|
nssv534566 | copy number loss | HGDP01275 | SNP array | SNP genotyping analysis | 1 | 5 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv534566 | Remapped | Perfect | NC_000016.10:g.(?_ 6346947)_(6651565_ ?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 6,346,947 | 6,651,565 |
nssv534566 | Remapped | Perfect | NC_000016.9:g.(?_6 396948)_(6701566_? )del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 6,396,948 | 6,701,566 |
nssv534566 | Submitted genomic | NC_000016.8:g.(?_6 336949)_(6641567_? )del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 6,336,949 | 6,641,567 |