nsv460477
- Organism: Homo sapiens
- Study:nstd27 (Itsara et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:387,587
- Publication(s):Itsara et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 910 SVs from 71 studies. See in: genome view
Overlapping variant regions from other studies: 910 SVs from 71 studies. See in: genome view
Overlapping variant regions from other studies: 40 SVs from 5 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv460477 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 22,491,169 | 22,878,755 |
| nsv460477 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 22,532,660 | 22,920,246 |
| nsv460477 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000003.9 | Chr3 | 22,507,664 | 22,895,250 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv633257 | copy number gain | SNP array | SNP genotyping analysis | 3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv633257 | Remapped | Perfect | NC_000003.12:g.(?_ 22491169)_(2287875 5_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 22,491,169 | 22,878,755 |
| nssv633257 | Remapped | Perfect | NC_000003.11:g.(?_ 22532660)_(2292024 6_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 22,532,660 | 22,920,246 |
| nssv633257 | Submitted genomic | NC_000003.9:g.(?_2 2507664)_(22895250 _?)dup | NCBI35 (hg17) | NC_000003.9 | Chr3 | 22,507,664 | 22,895,250 |