nsv461846
- Organism: Homo sapiens
- Study:nstd27 (Itsara et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:407,308
- Publication(s):Itsara et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1451 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 1451 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 153 SVs from 5 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv461846 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 178,744,216 | 179,151,523 |
nsv461846 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 179,665,370 | 180,072,677 |
nsv461846 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000004.9 | Chr4 | 180,040,519 | 180,447,826 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
---|---|---|---|---|---|---|
nssv538187 | copy number loss | 1780854302_A | SNP array | SNP genotyping analysis | 1 | 6 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv538187 | Remapped | Perfect | NC_000004.12:g.(?_ 178744216)_(179151 523_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 178,744,216 | 179,151,523 |
nssv538187 | Remapped | Perfect | NC_000004.11:g.(?_ 179665370)_(180072 677_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 179,665,370 | 180,072,677 |
nssv538187 | Submitted genomic | NC_000004.9:g.(?_1 80040519)_(1804478 26_?)del | NCBI35 (hg17) | NC_000004.9 | Chr4 | 180,040,519 | 180,447,826 |