nsv462159
- Organism: Homo sapiens
- Study:nstd27 (Itsara et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:269,179
- Publication(s):Itsara et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 582 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 582 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 57 SVs from 9 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv462159 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 50,664,839 | 50,934,017 |
| nsv462159 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 49,960,673 | 50,229,851 |
| nsv462159 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000005.8 | Chr5 | 49,996,430 | 50,265,608 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv639384 | copy number gain | SNP array | SNP genotyping analysis | 3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv639384 | Remapped | Perfect | NC_000005.10:g.(?_ 50664839)_(5093401 7_?)dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 50,664,839 | 50,934,017 |
| nssv639384 | Remapped | Perfect | NC_000005.9:g.(?_4 9960673)_(50229851 _?)dup | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 49,960,673 | 50,229,851 |
| nssv639384 | Submitted genomic | NC_000005.8:g.(?_4 9996430)_(50265608 _?)dup | NCBI35 (hg17) | NC_000005.8 | Chr5 | 49,996,430 | 50,265,608 |