nsv464000
- Organism: Homo sapiens
- Study:nstd27 (Itsara et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:777,275
- Publication(s):Itsara et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2697 SVs from 104 studies. See in: genome view
Overlapping variant regions from other studies: 2697 SVs from 104 studies. See in: genome view
Overlapping variant regions from other studies: 105 SVs from 11 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv464000 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 102,992,625 | 103,769,899 |
| nsv464000 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 103,440,500 | 104,217,774 |
| nsv464000 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000006.9 | Chr6 | 103,547,193 | 104,324,467 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv540003 | copy number loss | HGDP00683 | SNP array | SNP genotyping analysis | 1 | 8 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv540003 | Remapped | Perfect | NC_000006.12:g.(?_ 102992625)_(103769 899_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 102,992,625 | 103,769,899 |
| nssv540003 | Remapped | Perfect | NC_000006.11:g.(?_ 103440500)_(104217 774_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 103,440,500 | 104,217,774 |
| nssv540003 | Submitted genomic | NC_000006.9:g.(?_1 03547193)_(1043244 67_?)del | NCBI35 (hg17) | NC_000006.9 | Chr6 | 103,547,193 | 104,324,467 |