nsv464002
- Organism: Homo sapiens
- Study:nstd27 (Itsara et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:605,736
- Publication(s):Itsara et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2213 SVs from 101 studies. See in: genome view
Overlapping variant regions from other studies: 2213 SVs from 101 studies. See in: genome view
Overlapping variant regions from other studies: 91 SVs from 11 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv464002 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 103,088,006 | 103,693,741 |
| nsv464002 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 103,535,881 | 104,141,616 |
| nsv464002 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000006.9 | Chr6 | 103,642,574 | 104,248,309 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv540005 | copy number loss | HGDP00731 | SNP array | SNP genotyping analysis | 1 | 6 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv540005 | Remapped | Perfect | NC_000006.12:g.(?_ 103088006)_(103693 741_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 103,088,006 | 103,693,741 |
| nssv540005 | Remapped | Perfect | NC_000006.11:g.(?_ 103535881)_(104141 616_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 103,535,881 | 104,141,616 |
| nssv540005 | Submitted genomic | NC_000006.9:g.(?_1 03642574)_(1042483 09_?)del | NCBI35 (hg17) | NC_000006.9 | Chr6 | 103,642,574 | 104,248,309 |