nsv465531
- Organism: Homo sapiens
- Study:nstd27 (Itsara et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:291,879
- Publication(s):Itsara et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1413 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 1413 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 117 SVs from 9 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv465531 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 14,504,729 | 14,796,607 |
nsv465531 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 14,362,238 | 14,654,116 |
nsv465531 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000008.9 | Chr8 | 14,406,609 | 14,698,487 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
---|---|---|---|---|---|---|
nssv541322 | copy number loss | HGDP00631 | SNP array | SNP genotyping analysis | 1 | 7 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv541322 | Remapped | Perfect | NC_000008.11:g.(?_ 14504729)_(1479660 7_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 14,504,729 | 14,796,607 |
nssv541322 | Remapped | Perfect | NC_000008.10:g.(?_ 14362238)_(1465411 6_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 14,362,238 | 14,654,116 |
nssv541322 | Submitted genomic | NC_000008.9:g.(?_1 4406609)_(14698487 _?)del | NCBI35 (hg17) | NC_000008.9 | Chr8 | 14,406,609 | 14,698,487 |