nsv466072
- Organism: Homo sapiens
- Study:nstd27 (Itsara et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:308,149
- Publication(s):Itsara et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 681 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 683 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 60 SVs from 8 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv466072 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 175,461,719 | 175,769,867 |
| nsv466072 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 175,430,855 | 175,739,003 |
| nsv466072 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000001.8 | Chr1 | 172,162,512 | 172,470,660 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv541710 | copy number gain | HGDP00885 | SNP array | SNP genotyping analysis | 3 | 9 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv541710 | Remapped | Perfect | NC_000001.11:g.(?_ 175461719)_(175769 867_?)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 175,461,719 | 175,769,867 |
| nssv541710 | Remapped | Perfect | NC_000001.10:g.(?_ 175430855)_(175739 003_?)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 175,430,855 | 175,739,003 |
| nssv541710 | Submitted genomic | NC_000001.8:g.(?_1 72162512)_(1724706 60_?)dup | NCBI35 (hg17) | NC_000001.8 | Chr1 | 172,162,512 | 172,470,660 |