nsv466183
- Organism: Homo sapiens
- Study:nstd27 (Itsara et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:256,387
- Publication(s):Itsara et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1237 SVs from 81 studies. See in: genome view
Overlapping variant regions from other studies: 1241 SVs from 81 studies. See in: genome view
Overlapping variant regions from other studies: 47 SVs from 8 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv466183 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 11,305,052 | 11,561,438 |
| nsv466183 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 11,305,052 | 11,561,438 |
| nsv466183 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000009.9 | Chr9 | 11,295,052 | 11,551,438 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv541798 | copy number loss | 1780854455_A | SNP array | SNP genotyping analysis | 1 | 6 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv541798 | Remapped | Perfect | NC_000009.12:g.(?_ 11305052)_(1156143 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,305,052 | 11,561,438 |
| nssv541798 | Remapped | Perfect | NC_000009.11:g.(?_ 11305052)_(1156143 8_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,305,052 | 11,561,438 |
| nssv541798 | Submitted genomic | NC_000009.9:g.(?_1 1295052)_(11551438 _?)del | NCBI35 (hg17) | NC_000009.9 | Chr9 | 11,295,052 | 11,551,438 |