nsv467240
- Organism: Homo sapiens
- Study:nstd27 (Itsara et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:292,188
- Publication(s):Itsara et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1125 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 1125 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 50 SVs from 9 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv467240 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 55,161,079 | 55,453,266 |
nsv467240 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 56,920,839 | 57,213,026 |
nsv467240 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000010.8 | Chr10 | 56,590,845 | 56,883,032 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
---|---|---|---|---|---|---|
nssv542583 | copy number loss | 1780854335_A | SNP array | SNP genotyping analysis | 1 | nssv539556 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv542583 | Remapped | Perfect | NC_000010.11:g.(?_ 55161079)_(5545326 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,161,079 | 55,453,266 |
nssv542583 | Remapped | Perfect | NC_000010.10:g.(?_ 56920839)_(5721302 6_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,920,839 | 57,213,026 |
nssv542583 | Submitted genomic | NC_000010.8:g.(?_5 6590845)_(56883032 _?)del | NCBI35 (hg17) | NC_000010.8 | Chr10 | 56,590,845 | 56,883,032 |