nsv4679405
- Organism: Homo sapiens
- Study:nstd189 (Perez-Palma et al. 2020)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:147,866
- Publication(s):Pérez-Palma et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 600 SVs from 67 studies. See in: genome view
Overlapping variant regions from other studies: 600 SVs from 67 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4679405 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 28,840,941 | 28,988,806 |
| nsv4679405 | Submitted genomic | GRCh37.p13 | Primary Assembly | NC_000006.11 | Chr6 | 28,808,718 | 28,956,583 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16211246 | duplication | SNP array | SNP genotyping analysis |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16211246 | Remapped | Perfect | NC_000006.12:g.(?_ 28840941)_(2898880 6_?)dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 28,840,941 | 28,988,806 |
| nssv16211246 | Submitted genomic | NC_000006.11:g.(?_ 28808718)_(2895658 3_?)dup | GRCh37.p13 | NC_000006.11 | Chr6 | 28,808,718 | 28,956,583 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16211246 | <0.001 |