nsv4680426
- Organism: Homo sapiens
- Study:nstd189 (Perez-Palma et al. 2020)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:4,780,376
- Publication(s):Pérez-Palma et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 10995 SVs from 111 studies. See in: genome view
Overlapping variant regions from other studies: 10995 SVs from 111 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4680426 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 37,623,292 | 42,403,667 |
| nsv4680426 | Submitted genomic | GRCh37.p13 | Primary Assembly | NC_000005.9 | Chr5 | 37,623,394 | 42,403,769 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16211227 | duplication | SNP array | SNP genotyping analysis |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16211227 | Remapped | Perfect | NC_000005.10:g.(?_ 37623292)_(4240366 7_?)dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 37,623,292 | 42,403,667 |
| nssv16211227 | Submitted genomic | NC_000005.9:g.(?_3 7623394)_(42403769 _?)dup | GRCh37.p13 | NC_000005.9 | Chr5 | 37,623,394 | 42,403,769 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16211227 | 0.001 |