Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv4682445

Organism: Homo sapiens

Study:nstd102 (Clinical Structural Variants)
Variant Type:copy number variation
Method Type:Multiple
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: Yes
Region Size:3,897

Description:NC_000019.10:g.(?_852288)_(856184_?)del AND multiple conditions
Publication(s):Dale et al. 2002

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 247 SVs from 41 studies. See in: genome view

Remapped(Score: Perfect):852,288-856,184

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4682445	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	852,288	856,184
nsv4682445	Remapped	Good	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NT_187622.1	Chr19\|NT_1 87622.1	31,175	35,070
nsv4682445	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	852,288	856,184

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID
nssv17956005	deletion	Multiple	Multiple	CYCLIC NEUTROPENIA; Cyclic neutropenia; Cyclic neutropenia; Cyclical neutropenia; ELANE-Related Neutropenia; NEUTROPENIA, SEVERE CONGENITAL, 1, AUTOSOMAL DOMINANT; SCN1; Severe congenital neutropenia autosomal dominant	Uncertain significance	ClinVar	RCV001796344.7, VCV000832041.3

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv17956005	Remapped	Good	NT_187622.1:g.(?_3 1175)_(35070_?)del	GRCh38.p12	Second Pass	NT_187622.1	Chr19\|NT_1 87622.1	31,175	35,070
nssv17956005	Remapped	Perfect	NC_000019.10:g.(?_ 852288)_(856184_?) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	852,288	856,184
nssv17956005	Submitted genomic		NC_000019.9:g.(?_8 52288)_(856184_?)d el	GRCh37 (hg19)		NC_000019.9	Chr19	852,288	856,184

No validation data were submitted for this variant

Clinical Assertions

Variant Call ID	HGVS	Type	Allele Origin	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID
nssv17956005	GRCh37: NC_000019.9:g.(?_852288)_(856184_?)del	deletion	germline	CYCLIC NEUTROPENIA; Cyclic neutropenia; Cyclic neutropenia; Cyclical neutropenia; ELANE-Related Neutropenia; NEUTROPENIA, SEVERE CONGENITAL, 1, AUTOSOMAL DOMINANT; SCN1; Severe congenital neutropenia autosomal dominant	Uncertain significance	ClinVar	RCV001796344.7, VCV000832041.3

No genotype data were submitted for this variant

You are here: NCBI