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dbVar

Database of genomic structural variation

nsv4684422

Organism: Homo sapiens

Study:nstd192 (Smajlagić et al. 2020)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:219,142

Publication(s):Smajlagic et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1255 SVs from 89 studies. See in: genome view

Remapped(Score: Perfect):28,814,283-29,033,424

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4684422	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	28,814,283	29,033,424
nsv4684422	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000016.9	Chr16	28,825,604	29,044,745

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis
nssv16215330	duplication	mb1:o30	SNP array	SNP genotyping analysis
nssv16215331	duplication	mb1:o31	SNP array	SNP genotyping analysis
nssv16215332	duplication	mb1:o32	SNP array	SNP genotyping analysis
nssv16215333	duplication	mb1:o33	SNP array	SNP genotyping analysis
nssv16215334	duplication	mb1:o34	SNP array	SNP genotyping analysis
nssv16215374	deletion	mb1:o28	SNP array	SNP genotyping analysis

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv16215330	Remapped	Perfect	NC_000016.10:g.(?_ 28814283)_(2903342 4_?)dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	28,814,283	29,033,424
nssv16215331	Remapped	Perfect	NC_000016.10:g.(?_ 28814283)_(2903342 4_?)dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	28,814,283	29,033,424
nssv16215332	Remapped	Perfect	NC_000016.10:g.(?_ 28814283)_(2903342 4_?)dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	28,814,283	29,033,424
nssv16215333	Remapped	Perfect	NC_000016.10:g.(?_ 28814283)_(2903342 4_?)dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	28,814,283	29,033,424
nssv16215334	Remapped	Perfect	NC_000016.10:g.(?_ 28814283)_(2903342 4_?)dup	GRCh38.p12	First Pass	NC_000016.10	Chr16	28,814,283	29,033,424
nssv16215374	Remapped	Perfect	NC_000016.10:g.(?_ 28814283)_(2903342 4_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	28,814,283	29,033,424
nssv16215330	Submitted genomic		NC_000016.9:g.(?_2 8825604)_(29044745 _?)dup	GRCh37 (hg19)		NC_000016.9	Chr16	28,825,604	29,044,745
nssv16215331	Submitted genomic		NC_000016.9:g.(?_2 8825604)_(29044745 _?)dup	GRCh37 (hg19)		NC_000016.9	Chr16	28,825,604	29,044,745
nssv16215332	Submitted genomic		NC_000016.9:g.(?_2 8825604)_(29044745 _?)dup	GRCh37 (hg19)		NC_000016.9	Chr16	28,825,604	29,044,745
nssv16215333	Submitted genomic		NC_000016.9:g.(?_2 8825604)_(29044745 _?)dup	GRCh37 (hg19)		NC_000016.9	Chr16	28,825,604	29,044,745
nssv16215334	Submitted genomic		NC_000016.9:g.(?_2 8825604)_(29044745 _?)dup	GRCh37 (hg19)		NC_000016.9	Chr16	28,825,604	29,044,745
nssv16215374	Submitted genomic		NC_000016.9:g.(?_2 8825604)_(29044745 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	28,825,604	29,044,745

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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