nsv4684425
- Organism: Homo sapiens
- Study:nstd192 (Smajlagić et al. 2020)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:604,232
- Publication(s):Smajlagic et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2481 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 2481 SVs from 95 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv4684425 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 29,584,161 | 30,188,392 |
nsv4684425 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000016.9 | Chr16 | 29,595,482 | 30,199,713 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis |
---|---|---|---|---|
nssv16215377 | deletion | mb1:o35 | SNP array | SNP genotyping analysis |
nssv16215378 | deletion | mb1:o36 | SNP array | SNP genotyping analysis |
nssv16215379 | deletion | mb1:o37 | SNP array | SNP genotyping analysis |
nssv16215380 | deletion | mb1:o38 | SNP array | SNP genotyping analysis |
nssv16215381 | deletion | mb1:o39 | SNP array | SNP genotyping analysis |
nssv16215382 | deletion | mb1:o40 | SNP array | SNP genotyping analysis |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv16215377 | Remapped | Perfect | NC_000016.10:g.(?_ 29584161)_(3018839 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 29,584,161 | 30,188,392 |
nssv16215378 | Remapped | Perfect | NC_000016.10:g.(?_ 29584161)_(3018839 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 29,584,161 | 30,188,392 |
nssv16215379 | Remapped | Perfect | NC_000016.10:g.(?_ 29584161)_(3018839 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 29,584,161 | 30,188,392 |
nssv16215380 | Remapped | Perfect | NC_000016.10:g.(?_ 29584161)_(3018839 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 29,584,161 | 30,188,392 |
nssv16215381 | Remapped | Perfect | NC_000016.10:g.(?_ 29584161)_(3018839 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 29,584,161 | 30,188,392 |
nssv16215382 | Remapped | Perfect | NC_000016.10:g.(?_ 29584161)_(3018839 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 29,584,161 | 30,188,392 |
nssv16215377 | Submitted genomic | NC_000016.9:g.(?_2 9595482)_(30199713 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 29,595,482 | 30,199,713 | ||
nssv16215378 | Submitted genomic | NC_000016.9:g.(?_2 9595482)_(30199713 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 29,595,482 | 30,199,713 | ||
nssv16215379 | Submitted genomic | NC_000016.9:g.(?_2 9595482)_(30199713 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 29,595,482 | 30,199,713 | ||
nssv16215380 | Submitted genomic | NC_000016.9:g.(?_2 9595482)_(30199713 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 29,595,482 | 30,199,713 | ||
nssv16215381 | Submitted genomic | NC_000016.9:g.(?_2 9595482)_(30199713 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 29,595,482 | 30,199,713 | ||
nssv16215382 | Submitted genomic | NC_000016.9:g.(?_2 9595482)_(30199713 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 29,595,482 | 30,199,713 |