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dbVar

Database of genomic structural variation

nsv469767

Organism: Homo sapiens

Study:nstd29 (Locke et al. 2006)
Variant Type:copy number variation
Method Type:BAC aCGH
Submitted on:NCBI34 (hg16)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:207,082

Publication(s):Locke et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 886 SVs from 74 studies. See in: genome view

Remapped(Score: Perfect):21,279,803-21,486,884

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv469767	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000008.11	Chr8	21,279,803	21,486,884
nsv469767	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000008.10	Chr8	21,137,314	21,344,395
nsv469767	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000008.8	Chr8	21,147,587	21,354,668

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv1672477	copy number loss	BAC aCGH	Probe signal intensity
nssv1672879	copy number loss	BAC aCGH	Probe signal intensity
nssv1674376	copy number loss	BAC aCGH	Probe signal intensity
nssv1674796	copy number loss	BAC aCGH	Probe signal intensity
nssv1675666	copy number loss	BAC aCGH	Probe signal intensity
nssv1676090	copy number loss	BAC aCGH	Probe signal intensity

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1672477	Remapped	Perfect	NC_000008.11:g.(?_ 21279803)_(2148688 4_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	21,279,803	21,486,884
nssv1672879	Remapped	Perfect	NC_000008.11:g.(?_ 21279803)_(2148688 4_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	21,279,803	21,486,884
nssv1674376	Remapped	Perfect	NC_000008.11:g.(?_ 21279803)_(2148688 4_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	21,279,803	21,486,884
nssv1674796	Remapped	Perfect	NC_000008.11:g.(?_ 21279803)_(2148688 4_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	21,279,803	21,486,884
nssv1675666	Remapped	Perfect	NC_000008.11:g.(?_ 21279803)_(2148688 4_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	21,279,803	21,486,884
nssv1676090	Remapped	Perfect	NC_000008.11:g.(?_ 21279803)_(2148688 4_?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	21,279,803	21,486,884
nssv1672477	Remapped	Perfect	NC_000008.10:g.(?_ 21137314)_(2134439 5_?)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	21,137,314	21,344,395
nssv1672879	Remapped	Perfect	NC_000008.10:g.(?_ 21137314)_(2134439 5_?)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	21,137,314	21,344,395
nssv1674376	Remapped	Perfect	NC_000008.10:g.(?_ 21137314)_(2134439 5_?)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	21,137,314	21,344,395
nssv1674796	Remapped	Perfect	NC_000008.10:g.(?_ 21137314)_(2134439 5_?)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	21,137,314	21,344,395
nssv1675666	Remapped	Perfect	NC_000008.10:g.(?_ 21137314)_(2134439 5_?)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	21,137,314	21,344,395
nssv1676090	Remapped	Perfect	NC_000008.10:g.(?_ 21137314)_(2134439 5_?)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	21,137,314	21,344,395
nssv1672477	Submitted genomic		NC_000008.8:g.(?_2 1147587)_(21354668 _?)del	NCBI34 (hg16)		NC_000008.8	Chr8	21,147,587	21,354,668
nssv1672879	Submitted genomic		NC_000008.8:g.(?_2 1147587)_(21354668 _?)del	NCBI34 (hg16)		NC_000008.8	Chr8	21,147,587	21,354,668
nssv1674376	Submitted genomic		NC_000008.8:g.(?_2 1147587)_(21354668 _?)del	NCBI34 (hg16)		NC_000008.8	Chr8	21,147,587	21,354,668
nssv1674796	Submitted genomic		NC_000008.8:g.(?_2 1147587)_(21354668 _?)del	NCBI34 (hg16)		NC_000008.8	Chr8	21,147,587	21,354,668
nssv1675666	Submitted genomic		NC_000008.8:g.(?_2 1147587)_(21354668 _?)del	NCBI34 (hg16)		NC_000008.8	Chr8	21,147,587	21,354,668
nssv1676090	Submitted genomic		NC_000008.8:g.(?_2 1147587)_(21354668 _?)del	NCBI34 (hg16)		NC_000008.8	Chr8	21,147,587	21,354,668

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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