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dbVar

Database of genomic structural variation

nsv469807

Organism: Homo sapiens

Study:nstd29 (Locke et al. 2006)
Variant Type:copy number variation
Method Type:BAC aCGH
Submitted on:NCBI34 (hg16)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:169,600

Publication(s):Locke et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 436 SVs from 63 studies. See in: genome view

Remapped(Score: Perfect):79,043,070-79,212,669

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv469807	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	79,043,070	79,212,669
nsv469807	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000010.10	Chr10	80,802,827	80,972,426
nsv469807	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000010.7	Chr10	80,147,430	80,317,029

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv1672364	copy number loss	BAC aCGH	Probe signal intensity
nssv1674270	copy number loss	BAC aCGH	Probe signal intensity
nssv1675002	copy number loss	BAC aCGH	Probe signal intensity
nssv1675183	copy number loss	BAC aCGH	Probe signal intensity
nssv1675346	copy number loss	BAC aCGH	Probe signal intensity

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1672364	Remapped	Perfect	NC_000010.11:g.(?_ 79043070)_(7921266 9_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	79,043,070	79,212,669
nssv1674270	Remapped	Perfect	NC_000010.11:g.(?_ 79043070)_(7921266 9_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	79,043,070	79,212,669
nssv1675002	Remapped	Perfect	NC_000010.11:g.(?_ 79043070)_(7921266 9_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	79,043,070	79,212,669
nssv1675183	Remapped	Perfect	NC_000010.11:g.(?_ 79043070)_(7921266 9_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	79,043,070	79,212,669
nssv1675346	Remapped	Perfect	NC_000010.11:g.(?_ 79043070)_(7921266 9_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	79,043,070	79,212,669
nssv1672364	Remapped	Perfect	NC_000010.10:g.(?_ 80802827)_(8097242 6_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	80,802,827	80,972,426
nssv1674270	Remapped	Perfect	NC_000010.10:g.(?_ 80802827)_(8097242 6_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	80,802,827	80,972,426
nssv1675002	Remapped	Perfect	NC_000010.10:g.(?_ 80802827)_(8097242 6_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	80,802,827	80,972,426
nssv1675183	Remapped	Perfect	NC_000010.10:g.(?_ 80802827)_(8097242 6_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	80,802,827	80,972,426
nssv1675346	Remapped	Perfect	NC_000010.10:g.(?_ 80802827)_(8097242 6_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	80,802,827	80,972,426
nssv1672364	Submitted genomic		NC_000010.7:g.(?_8 0147430)_(80317029 _?)del	NCBI34 (hg16)		NC_000010.7	Chr10	80,147,430	80,317,029
nssv1674270	Submitted genomic		NC_000010.7:g.(?_8 0147430)_(80317029 _?)del	NCBI34 (hg16)		NC_000010.7	Chr10	80,147,430	80,317,029
nssv1675002	Submitted genomic		NC_000010.7:g.(?_8 0147430)_(80317029 _?)del	NCBI34 (hg16)		NC_000010.7	Chr10	80,147,430	80,317,029
nssv1675183	Submitted genomic		NC_000010.7:g.(?_8 0147430)_(80317029 _?)del	NCBI34 (hg16)		NC_000010.7	Chr10	80,147,430	80,317,029
nssv1675346	Submitted genomic		NC_000010.7:g.(?_8 0147430)_(80317029 _?)del	NCBI34 (hg16)		NC_000010.7	Chr10	80,147,430	80,317,029

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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