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dbVar

Database of genomic structural variation

nsv470222

Organism: Homo sapiens

Study:nstd30 (Jakobsson et al. 2008)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:163,114

Description:Single-copy duplication
Publication(s):Jakobsson et al. 2008

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 640 SVs from 61 studies. See in: genome view

Remapped(Score: Perfect):83,259,524-83,422,637

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv470222	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000008.11	Chr8	83,259,524	83,422,637
nsv470222	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000008.10	Chr8	84,171,759	84,334,872
nsv470222	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000008.9	Chr8	84,334,314	84,497,427

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv546745	copy number gain	HGDP00655	SNP array	SNP genotyping analysis	3	15
nssv546742	copy number gain	HGDP00356	SNP array	SNP genotyping analysis	3	15
nssv546746	copy number gain	HGDP00953	SNP array	SNP genotyping analysis	3	6
nssv546741	copy number gain	HGDP01363	SNP array	SNP genotyping analysis	3	10
nssv546744	copy number gain	HGDP01220	SNP array	SNP genotyping analysis	3	5

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv546745	Remapped	Perfect	NC_000008.11:g.(?_ 83259524)_(8337501 8_?)dup	GRCh38.p12	First Pass	NC_000008.11	Chr8	83,259,524	83,375,018
nssv546742	Remapped	Perfect	NC_000008.11:g.(?_ 83299332)_(8337501 8_?)dup	GRCh38.p12	First Pass	NC_000008.11	Chr8	83,299,332	83,375,018
nssv546746	Remapped	Perfect	NC_000008.11:g.(?_ 83299332)_(8337501 8_?)dup	GRCh38.p12	First Pass	NC_000008.11	Chr8	83,299,332	83,375,018
nssv546741	Remapped	Perfect	NC_000008.11:g.(?_ 83299332)_(8342263 7_?)dup	GRCh38.p12	First Pass	NC_000008.11	Chr8	83,299,332	83,422,637
nssv546744	Remapped	Perfect	NC_000008.11:g.(?_ 83367648)_(8342263 7_?)dup	GRCh38.p12	First Pass	NC_000008.11	Chr8	83,367,648	83,422,637
nssv546745	Remapped	Perfect	NC_000008.10:g.(?_ 84171759)_(8428725 3_?)dup	GRCh37.p13	First Pass	NC_000008.10	Chr8	84,171,759	84,287,253
nssv546742	Remapped	Perfect	NC_000008.10:g.(?_ 84211567)_(8428725 3_?)dup	GRCh37.p13	First Pass	NC_000008.10	Chr8	84,211,567	84,287,253
nssv546746	Remapped	Perfect	NC_000008.10:g.(?_ 84211567)_(8428725 3_?)dup	GRCh37.p13	First Pass	NC_000008.10	Chr8	84,211,567	84,287,253
nssv546741	Remapped	Perfect	NC_000008.10:g.(?_ 84211567)_(8433487 2_?)dup	GRCh37.p13	First Pass	NC_000008.10	Chr8	84,211,567	84,334,872
nssv546744	Remapped	Perfect	NC_000008.10:g.(?_ 84279883)_(8433487 2_?)dup	GRCh37.p13	First Pass	NC_000008.10	Chr8	84,279,883	84,334,872
nssv546745	Submitted genomic		NC_000008.9:g.(?_8 4334314)_(84449808 _?)dup	NCBI36 (hg18)		NC_000008.9	Chr8	84,334,314	84,449,808
nssv546742	Submitted genomic		NC_000008.9:g.(?_8 4374122)_(84449808 _?)dup	NCBI36 (hg18)		NC_000008.9	Chr8	84,374,122	84,449,808
nssv546746	Submitted genomic		NC_000008.9:g.(?_8 4374122)_(84449808 _?)dup	NCBI36 (hg18)		NC_000008.9	Chr8	84,374,122	84,449,808
nssv546741	Submitted genomic		NC_000008.9:g.(?_8 4374122)_(84497427 _?)dup	NCBI36 (hg18)		NC_000008.9	Chr8	84,374,122	84,497,427
nssv546744	Submitted genomic		NC_000008.9:g.(?_8 4442438)_(84497427 _?)dup	NCBI36 (hg18)		NC_000008.9	Chr8	84,442,438	84,497,427

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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