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dbVar

Database of genomic structural variation

nsv470645

Organism: Homo sapiens

Study:nstd30 (Jakobsson et al. 2008)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:214,302

Publication(s):Jakobsson et al. 2008

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 762 SVs from 73 studies. See in: genome view

Remapped(Score: Perfect):46,190,271-46,404,572

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv470645	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000014.9	Chr14	46,190,271	46,404,572
nsv470645	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000014.8	Chr14	46,659,474	46,873,775
nsv470645	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000014.7	Chr14	45,729,224	45,943,525

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Zygosity	Other Calls in this Sample and Study
nssv547575	copy number loss	HGDP00876	SNP array	SNP genotyping analysis	1	Heterozygous	34
nssv547576	copy number loss	HGDP00890	SNP array	SNP genotyping analysis	1	Heterozygous	28

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv547575	Remapped	Perfect	NC_000014.9:g.(?_4 6190271)_(46311997 _?)del	GRCh38.p12	First Pass	NC_000014.9	Chr14	46,190,271	46,311,997
nssv547576	Remapped	Perfect	NC_000014.9:g.(?_4 6308006)_(46404572 _?)del	GRCh38.p12	First Pass	NC_000014.9	Chr14	46,308,006	46,404,572
nssv547575	Remapped	Perfect	NC_000014.8:g.(?_4 6659474)_(46781200 _?)del	GRCh37.p13	First Pass	NC_000014.8	Chr14	46,659,474	46,781,200
nssv547576	Remapped	Perfect	NC_000014.8:g.(?_4 6777209)_(46873775 _?)del	GRCh37.p13	First Pass	NC_000014.8	Chr14	46,777,209	46,873,775
nssv547575	Submitted genomic		NC_000014.7:g.(?_4 5729224)_(45850950 _?)del	NCBI36 (hg18)		NC_000014.7	Chr14	45,729,224	45,850,950
nssv547576	Submitted genomic		NC_000014.7:g.(?_4 5846959)_(45943525 _?)del	NCBI36 (hg18)		NC_000014.7	Chr14	45,846,959	45,943,525

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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