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dbVar

Database of genomic structural variation

nsv471352

Organism: Homo sapiens

Study:nstd31 (Alkan et al. 2009)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Yes
Clinical Assertions: No
Region Size:18,943

Description:CFHR3
Publication(s):Alkan et al. 2009

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1298 SVs from 96 studies. See in: genome view

Remapped(Score: Perfect):196,774,800-196,793,742

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv471352	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	196,774,800	196,793,742
nsv471352	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	196,743,930	196,762,872
nsv471352	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000001.8	Chr1	193,475,587	193,494,529

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv548050	copy number gain	JDW	Sequencing	Read depth	5	198
nssv548051	copy number gain	YH	Sequencing	Read depth	4	201

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nssv548050	Remapped	Perfect	NC_000001.11:g.(19 6774800_?)_(?_1967 93742)dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	196,774,800	196,793,742
nssv548051	Remapped	Perfect	NC_000001.11:g.(19 6774800_?)_(?_1967 93742)dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	196,774,800	196,793,742
nssv548050	Remapped	Perfect	NC_000001.10:g.(19 6743930_?)_(?_1967 62872)dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	196,743,930	196,762,872
nssv548051	Remapped	Perfect	NC_000001.10:g.(19 6743930_?)_(?_1967 62872)dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	196,743,930	196,762,872
nssv548050	Submitted genomic		NC_000001.8:g.(193 475587_?)_(?_19349 4529)dup	NCBI35 (hg17)		NC_000001.8	Chr1	193,475,587	193,494,529
nssv548051	Submitted genomic		NC_000001.8:g.(193 475587_?)_(?_19349 4529)dup	NCBI35 (hg17)		NC_000001.8	Chr1	193,475,587	193,494,529

Validation Information

Variant Call ID	Experiment ID	Sample ID	Method	Analysis	Result
nssv548050	4	JDW	Oligo aCGH	Probe signal intensity	Pass
nssv548051	4	YH	Oligo aCGH	Probe signal intensity	Pass

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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