nsv471393
- Organism: Homo sapiens
- Study:nstd31 (Alkan et al. 2009)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:2
- Validation:Yes
- Clinical Assertions: No
- Region Size:26,023
- Description:CFH
- Publication(s):Alkan et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1005 SVs from 91 studies. See in: genome view
Overlapping variant regions from other studies: 1005 SVs from 91 studies. See in: genome view
Overlapping variant regions from other studies: 29 SVs from 8 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
---|---|---|---|---|---|---|---|---|---|
nsv471393 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 196,744,214 | 196,770,236 |
nsv471393 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 196,713,344 | 196,739,366 |
nsv471393 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000001.8 | Chr1 | 193,445,001 | 193,471,023 |
Variant Call Information
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
---|---|---|---|---|---|---|---|---|---|
nssv548189 | Remapped | Perfect | NC_000001.11:g.(19 6744214_?)_(?_1967 70236)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 196,744,214 | 196,770,236 |
nssv548200 | Remapped | Perfect | NC_000001.11:g.(19 6744214_?)_(?_1967 70236)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 196,744,214 | 196,770,236 |
nssv548189 | Remapped | Perfect | NC_000001.10:g.(19 6713344_?)_(?_1967 39366)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 196,713,344 | 196,739,366 |
nssv548200 | Remapped | Perfect | NC_000001.10:g.(19 6713344_?)_(?_1967 39366)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 196,713,344 | 196,739,366 |
nssv548189 | Submitted genomic | NC_000001.8:g.(193 445001_?)_(?_19347 1023)dup | NCBI35 (hg17) | NC_000001.8 | Chr1 | 193,445,001 | 193,471,023 | ||
nssv548200 | Submitted genomic | NC_000001.8:g.(193 445001_?)_(?_19347 1023)dup | NCBI35 (hg17) | NC_000001.8 | Chr1 | 193,445,001 | 193,471,023 |
Validation Information
Variant Call ID | Experiment ID | Sample ID | Method | Analysis | Result |
---|---|---|---|---|---|
nssv548189 | 3 | JDW | Oligo aCGH | Probe signal intensity | Pass |
nssv548200 | 3 | YH | Oligo aCGH | Probe signal intensity | Pass |