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dbVar

Database of genomic structural variation

nsv471607

Organism: Homo sapiens

Study:nstd32 (Sharp et al. 2005)
Variant Type:copy number variation
Method Type:BAC aCGH
Submitted on:NCBI34 (hg16)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:159,875

Publication(s):Sharp et al. 2005

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 922 SVs from 60 studies. See in: genome view

Remapped(Score: Good):155,652,457-155,812,331

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv471607	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	155,652,457	155,812,331
nsv471607	Remapped	Pass	GRCh37.p13	Primary Assembly	First Pass	NC_000023.10	ChrX	154,906,586	155,041,994
nsv471607	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000023.7	ChrX	153,313,949	153,473,825

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv549605	copy number loss	GM10496A	BAC aCGH	Probe signal intensity	59
nssv549606	copy number gain	GM10971	BAC aCGH	Probe signal intensity	56
nssv549607	copy number gain	GM15731	BAC aCGH	Probe signal intensity	42
nssv549608	copy number gain	GM15733	BAC aCGH	Probe signal intensity	51
nssv549609	copy number gain	GM17059A	BAC aCGH	Probe signal intensity	44

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv549605	Remapped	Good	NC_000023.11:g.(?_ 155652457)_(155812 331_?)del	GRCh38.p12	First Pass	NC_000023.11	ChrX	155,652,457	155,812,331
nssv549606	Remapped	Good	NC_000023.11:g.(?_ 155652457)_(155812 331_?)dup	GRCh38.p12	First Pass	NC_000023.11	ChrX	155,652,457	155,812,331
nssv549607	Remapped	Good	NC_000023.11:g.(?_ 155652457)_(155812 331_?)dup	GRCh38.p12	First Pass	NC_000023.11	ChrX	155,652,457	155,812,331
nssv549608	Remapped	Good	NC_000023.11:g.(?_ 155652457)_(155812 331_?)dup	GRCh38.p12	First Pass	NC_000023.11	ChrX	155,652,457	155,812,331
nssv549609	Remapped	Good	NC_000023.11:g.(?_ 155652457)_(155812 331_?)dup	GRCh38.p12	First Pass	NC_000023.11	ChrX	155,652,457	155,812,331
nssv549605	Remapped	Pass	NC_000023.10:g.(?_ 154906586)_(155041 994_?)del	GRCh37.p13	First Pass	NC_000023.10	ChrX	154,906,586	155,041,994
nssv549606	Remapped	Pass	NC_000023.10:g.(?_ 154906586)_(155041 994_?)dup	GRCh37.p13	First Pass	NC_000023.10	ChrX	154,906,586	155,041,994
nssv549607	Remapped	Pass	NC_000023.10:g.(?_ 154906586)_(155041 994_?)dup	GRCh37.p13	First Pass	NC_000023.10	ChrX	154,906,586	155,041,994
nssv549608	Remapped	Pass	NC_000023.10:g.(?_ 154906586)_(155041 994_?)dup	GRCh37.p13	First Pass	NC_000023.10	ChrX	154,906,586	155,041,994
nssv549609	Remapped	Pass	NC_000023.10:g.(?_ 154906586)_(155041 994_?)dup	GRCh37.p13	First Pass	NC_000023.10	ChrX	154,906,586	155,041,994
nssv549605	Submitted genomic		NC_000023.7:g.(?_1 53313949)_(1534738 25_?)del	NCBI34 (hg16)		NC_000023.7	ChrX	153,313,949	153,473,825
nssv549606	Submitted genomic		NC_000023.7:g.(?_1 53313949)_(1534738 25_?)dup	NCBI34 (hg16)		NC_000023.7	ChrX	153,313,949	153,473,825
nssv549607	Submitted genomic		NC_000023.7:g.(?_1 53313949)_(1534738 25_?)dup	NCBI34 (hg16)		NC_000023.7	ChrX	153,313,949	153,473,825
nssv549608	Submitted genomic		NC_000023.7:g.(?_1 53313949)_(1534738 25_?)dup	NCBI34 (hg16)		NC_000023.7	ChrX	153,313,949	153,473,825
nssv549609	Submitted genomic		NC_000023.7:g.(?_1 53313949)_(1534738 25_?)dup	NCBI34 (hg16)		NC_000023.7	ChrX	153,313,949	153,473,825

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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