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dbVar

Database of genomic structural variation

nsv471637

Organism: Homo sapiens

Study:nstd32 (Sharp et al. 2005)
Variant Type:copy number variation
Method Type:BAC aCGH
Submitted on:NCBI34 (hg16)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:154,373

Publication(s):Sharp et al. 2005

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 477 SVs from 60 studies. See in: genome view

Remapped(Score: Perfect):47,339,291-47,493,663

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv471637	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	47,339,291	47,493,663
nsv471637	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	47,307,027	47,461,399
nsv471637	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000006.8	Chr6	47,353,863	47,508,235

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv549636	copy number loss	GM10976	BAC aCGH	Probe signal intensity	56
nssv549637	copy number loss	GM10979	BAC aCGH	Probe signal intensity	65
nssv549638	copy number loss	GM15732	BAC aCGH	Probe signal intensity	56
nssv549639	copy number gain	GM17020A	BAC aCGH	Probe signal intensity	43
nssv549640	copy number loss	JK776	BAC aCGH	Probe signal intensity	50

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv549636	Remapped	Perfect	NC_000006.12:g.(?_ 47339291)_(4749366 3_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	47,339,291	47,493,663
nssv549637	Remapped	Perfect	NC_000006.12:g.(?_ 47339291)_(4749366 3_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	47,339,291	47,493,663
nssv549638	Remapped	Perfect	NC_000006.12:g.(?_ 47339291)_(4749366 3_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	47,339,291	47,493,663
nssv549639	Remapped	Perfect	NC_000006.12:g.(?_ 47339291)_(4749366 3_?)dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	47,339,291	47,493,663
nssv549640	Remapped	Perfect	NC_000006.12:g.(?_ 47339291)_(4749366 3_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	47,339,291	47,493,663
nssv549636	Remapped	Perfect	NC_000006.11:g.(?_ 47307027)_(4746139 9_?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	47,307,027	47,461,399
nssv549637	Remapped	Perfect	NC_000006.11:g.(?_ 47307027)_(4746139 9_?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	47,307,027	47,461,399
nssv549638	Remapped	Perfect	NC_000006.11:g.(?_ 47307027)_(4746139 9_?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	47,307,027	47,461,399
nssv549639	Remapped	Perfect	NC_000006.11:g.(?_ 47307027)_(4746139 9_?)dup	GRCh37.p13	First Pass	NC_000006.11	Chr6	47,307,027	47,461,399
nssv549640	Remapped	Perfect	NC_000006.11:g.(?_ 47307027)_(4746139 9_?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	47,307,027	47,461,399
nssv549636	Submitted genomic		NC_000006.8:g.(?_4 7353863)_(47508235 _?)del	NCBI34 (hg16)		NC_000006.8	Chr6	47,353,863	47,508,235
nssv549637	Submitted genomic		NC_000006.8:g.(?_4 7353863)_(47508235 _?)del	NCBI34 (hg16)		NC_000006.8	Chr6	47,353,863	47,508,235
nssv549638	Submitted genomic		NC_000006.8:g.(?_4 7353863)_(47508235 _?)del	NCBI34 (hg16)		NC_000006.8	Chr6	47,353,863	47,508,235
nssv549639	Submitted genomic		NC_000006.8:g.(?_4 7353863)_(47508235 _?)dup	NCBI34 (hg16)		NC_000006.8	Chr6	47,353,863	47,508,235
nssv549640	Submitted genomic		NC_000006.8:g.(?_4 7353863)_(47508235 _?)del	NCBI34 (hg16)		NC_000006.8	Chr6	47,353,863	47,508,235

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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