Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv471642

Organism: Homo sapiens

Study:nstd32 (Sharp et al. 2005)
Variant Type:copy number variation
Method Type:BAC aCGH
Submitted on:NCBI34 (hg16)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:169,286

Publication(s):Sharp et al. 2005

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 474 SVs from 64 studies. See in: genome view

Remapped(Score: Perfect):78,919,004-79,088,289

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv471642	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000007.14	Chr7	78,919,004	79,088,289
nsv471642	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000007.13	Chr7	78,548,320	78,717,605
nsv471642	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000007.10	Chr7	78,160,371	78,329,656

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv551115	copy number loss	GM10470A	BAC aCGH	Probe signal intensity	49
nssv551116	copy number loss	GM10472A	BAC aCGH	Probe signal intensity	51
nssv551117	copy number loss	GM10494A	BAC aCGH	Probe signal intensity	55
nssv551118	copy number loss	GM15730	BAC aCGH	Probe signal intensity	49
nssv551119	copy number loss	JK1061	BAC aCGH	Probe signal intensity	51

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv551115	Remapped	Perfect	NC_000007.14:g.(?_ 78919004)_(7908828 9_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	78,919,004	79,088,289
nssv551116	Remapped	Perfect	NC_000007.14:g.(?_ 78919004)_(7908828 9_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	78,919,004	79,088,289
nssv551117	Remapped	Perfect	NC_000007.14:g.(?_ 78919004)_(7908828 9_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	78,919,004	79,088,289
nssv551118	Remapped	Perfect	NC_000007.14:g.(?_ 78919004)_(7908828 9_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	78,919,004	79,088,289
nssv551119	Remapped	Perfect	NC_000007.14:g.(?_ 78919004)_(7908828 9_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	78,919,004	79,088,289
nssv551115	Remapped	Perfect	NC_000007.13:g.(?_ 78548320)_(7871760 5_?)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	78,548,320	78,717,605
nssv551116	Remapped	Perfect	NC_000007.13:g.(?_ 78548320)_(7871760 5_?)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	78,548,320	78,717,605
nssv551117	Remapped	Perfect	NC_000007.13:g.(?_ 78548320)_(7871760 5_?)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	78,548,320	78,717,605
nssv551118	Remapped	Perfect	NC_000007.13:g.(?_ 78548320)_(7871760 5_?)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	78,548,320	78,717,605
nssv551119	Remapped	Perfect	NC_000007.13:g.(?_ 78548320)_(7871760 5_?)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	78,548,320	78,717,605
nssv551115	Submitted genomic		NC_000007.10:g.(?_ 78160371)_(7832965 6_?)del	NCBI34 (hg16)		NC_000007.10	Chr7	78,160,371	78,329,656
nssv551116	Submitted genomic		NC_000007.10:g.(?_ 78160371)_(7832965 6_?)del	NCBI34 (hg16)		NC_000007.10	Chr7	78,160,371	78,329,656
nssv551117	Submitted genomic		NC_000007.10:g.(?_ 78160371)_(7832965 6_?)del	NCBI34 (hg16)		NC_000007.10	Chr7	78,160,371	78,329,656
nssv551118	Submitted genomic		NC_000007.10:g.(?_ 78160371)_(7832965 6_?)del	NCBI34 (hg16)		NC_000007.10	Chr7	78,160,371	78,329,656
nssv551119	Submitted genomic		NC_000007.10:g.(?_ 78160371)_(7832965 6_?)del	NCBI34 (hg16)		NC_000007.10	Chr7	78,160,371	78,329,656

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI