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dbVar

Database of genomic structural variation

nsv471663

Organism: Homo sapiens

Study:nstd32 (Sharp et al. 2005)
Variant Type:copy number variation
Method Type:BAC aCGH
Submitted on:NCBI34 (hg16)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:189,369

Publication(s):Sharp et al. 2005

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 409 SVs from 56 studies. See in: genome view

Remapped(Score: Pass):89,762,978-89,952,346

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv471663	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000009.12	Chr9	89,762,978	89,952,346
nsv471663	Submitted genomic		NCBI34 (hg16)	Primary Assembly		GPC_000000201.1	Chr9	87,905,833	88,056,036

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv550253	copy number gain	GM10976	BAC aCGH	Probe signal intensity	56
nssv550254	copy number gain	GM11776	BAC aCGH	Probe signal intensity	31
nssv550255	copy number gain	GM15726	BAC aCGH	Probe signal intensity	41
nssv550256	copy number gain	GM15731	BAC aCGH	Probe signal intensity	42
nssv550257	copy number loss	GM15733	BAC aCGH	Probe signal intensity	51
nssv550258	copy number gain	GM17058	BAC aCGH	Probe signal intensity	54

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv550253	Remapped	Pass	NC_000009.12:g.(?_ 89762978)_(8995234 6_?)dup	GRCh38.p12	First Pass	NC_000009.12	Chr9	89,762,978	89,952,346
nssv550254	Remapped	Pass	NC_000009.12:g.(?_ 89762978)_(8995234 6_?)dup	GRCh38.p12	First Pass	NC_000009.12	Chr9	89,762,978	89,952,346
nssv550255	Remapped	Pass	NC_000009.12:g.(?_ 89762978)_(8995234 6_?)dup	GRCh38.p12	First Pass	NC_000009.12	Chr9	89,762,978	89,952,346
nssv550256	Remapped	Pass	NC_000009.12:g.(?_ 89762978)_(8995234 6_?)dup	GRCh38.p12	First Pass	NC_000009.12	Chr9	89,762,978	89,952,346
nssv550257	Remapped	Pass	NC_000009.12:g.(?_ 89762978)_(8995234 6_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	89,762,978	89,952,346
nssv550258	Remapped	Pass	NC_000009.12:g.(?_ 89762978)_(8995234 6_?)dup	GRCh38.p12	First Pass	NC_000009.12	Chr9	89,762,978	89,952,346
nssv550253	Submitted genomic		GPC_000000201.1:g. (?_87905833)_(8805 6036_?)dup	NCBI34 (hg16)		GPC_000000201.1	Chr9	87,905,833	88,056,036
nssv550254	Submitted genomic		GPC_000000201.1:g. (?_87905833)_(8805 6036_?)dup	NCBI34 (hg16)		GPC_000000201.1	Chr9	87,905,833	88,056,036
nssv550255	Submitted genomic		GPC_000000201.1:g. (?_87905833)_(8805 6036_?)dup	NCBI34 (hg16)		GPC_000000201.1	Chr9	87,905,833	88,056,036
nssv550256	Submitted genomic		GPC_000000201.1:g. (?_87905833)_(8805 6036_?)dup	NCBI34 (hg16)		GPC_000000201.1	Chr9	87,905,833	88,056,036
nssv550257	Submitted genomic		GPC_000000201.1:g. (?_87905833)_(8805 6036_?)del	NCBI34 (hg16)		GPC_000000201.1	Chr9	87,905,833	88,056,036
nssv550258	Submitted genomic		GPC_000000201.1:g. (?_87905833)_(8805 6036_?)dup	NCBI34 (hg16)		GPC_000000201.1	Chr9	87,905,833	88,056,036

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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