nsv471679
- Organism: Homo sapiens
- Study:nstd32 (Sharp et al. 2005)
- Variant Type:copy number variation
- Method Type:BAC aCGH
- Submitted on:NCBI34 (hg16)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:123,087
- Publication(s):Sharp et al. 2005
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 908 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 908 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 5 SVs from 2 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv471679 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 30,199,527 | 30,322,613 |
| nsv471679 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 30,491,730 | 30,614,816 |
| nsv471679 | Submitted genomic | NCBI34 (hg16) | Primary Assembly | NC_000015.7 | Chr15 | 28,207,786 | 28,330,872 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv550170 | copy number loss | GM10495B | BAC aCGH | Probe signal intensity | 45 |
| nssv550171 | copy number loss | GM10967 | BAC aCGH | Probe signal intensity | 58 |
| nssv550172 | copy number loss | GM10969 | BAC aCGH | Probe signal intensity | 51 |
| nssv550173 | copy number loss | GM15728 | BAC aCGH | Probe signal intensity | 33 |
| nssv550174 | copy number loss | GM15732 | BAC aCGH | Probe signal intensity | 56 |
| nssv550175 | copy number loss | JK1058B | BAC aCGH | Probe signal intensity | 61 |
| nssv550176 | copy number loss | P86GA | BAC aCGH | Probe signal intensity | 50 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv550170 | Remapped | Perfect | NC_000015.10:g.(?_ 30199527)_(3032261 3_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 30,199,527 | 30,322,613 |
| nssv550171 | Remapped | Perfect | NC_000015.10:g.(?_ 30199527)_(3032261 3_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 30,199,527 | 30,322,613 |
| nssv550172 | Remapped | Perfect | NC_000015.10:g.(?_ 30199527)_(3032261 3_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 30,199,527 | 30,322,613 |
| nssv550173 | Remapped | Perfect | NC_000015.10:g.(?_ 30199527)_(3032261 3_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 30,199,527 | 30,322,613 |
| nssv550174 | Remapped | Perfect | NC_000015.10:g.(?_ 30199527)_(3032261 3_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 30,199,527 | 30,322,613 |
| nssv550175 | Remapped | Perfect | NC_000015.10:g.(?_ 30199527)_(3032261 3_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 30,199,527 | 30,322,613 |
| nssv550176 | Remapped | Perfect | NC_000015.10:g.(?_ 30199527)_(3032261 3_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 30,199,527 | 30,322,613 |
| nssv550170 | Remapped | Perfect | NC_000015.9:g.(?_3 0491730)_(30614816 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 30,491,730 | 30,614,816 |
| nssv550171 | Remapped | Perfect | NC_000015.9:g.(?_3 0491730)_(30614816 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 30,491,730 | 30,614,816 |
| nssv550172 | Remapped | Perfect | NC_000015.9:g.(?_3 0491730)_(30614816 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 30,491,730 | 30,614,816 |
| nssv550173 | Remapped | Perfect | NC_000015.9:g.(?_3 0491730)_(30614816 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 30,491,730 | 30,614,816 |
| nssv550174 | Remapped | Perfect | NC_000015.9:g.(?_3 0491730)_(30614816 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 30,491,730 | 30,614,816 |
| nssv550175 | Remapped | Perfect | NC_000015.9:g.(?_3 0491730)_(30614816 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 30,491,730 | 30,614,816 |
| nssv550176 | Remapped | Perfect | NC_000015.9:g.(?_3 0491730)_(30614816 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 30,491,730 | 30,614,816 |
| nssv550170 | Submitted genomic | NC_000015.7:g.(?_2 8207786)_(28330872 _?)del | NCBI34 (hg16) | NC_000015.7 | Chr15 | 28,207,786 | 28,330,872 | ||
| nssv550171 | Submitted genomic | NC_000015.7:g.(?_2 8207786)_(28330872 _?)del | NCBI34 (hg16) | NC_000015.7 | Chr15 | 28,207,786 | 28,330,872 | ||
| nssv550172 | Submitted genomic | NC_000015.7:g.(?_2 8207786)_(28330872 _?)del | NCBI34 (hg16) | NC_000015.7 | Chr15 | 28,207,786 | 28,330,872 | ||
| nssv550173 | Submitted genomic | NC_000015.7:g.(?_2 8207786)_(28330872 _?)del | NCBI34 (hg16) | NC_000015.7 | Chr15 | 28,207,786 | 28,330,872 | ||
| nssv550174 | Submitted genomic | NC_000015.7:g.(?_2 8207786)_(28330872 _?)del | NCBI34 (hg16) | NC_000015.7 | Chr15 | 28,207,786 | 28,330,872 | ||
| nssv550175 | Submitted genomic | NC_000015.7:g.(?_2 8207786)_(28330872 _?)del | NCBI34 (hg16) | NC_000015.7 | Chr15 | 28,207,786 | 28,330,872 | ||
| nssv550176 | Submitted genomic | NC_000015.7:g.(?_2 8207786)_(28330872 _?)del | NCBI34 (hg16) | NC_000015.7 | Chr15 | 28,207,786 | 28,330,872 |