nsv471681
- Organism: Homo sapiens
- Study:nstd32 (Sharp et al. 2005)
- Variant Type:copy number variation
- Method Type:BAC aCGH
- Submitted on:NCBI34 (hg16)
- Variant Calls:12
- Validation:Not tested
- Clinical Assertions: No
- Region Size:232,082
- Publication(s):Sharp et al. 2005
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1834 SVs from 108 studies. See in: genome view
Overlapping variant regions from other studies: 1834 SVs from 108 studies. See in: genome view
Overlapping variant regions from other studies: 4 SVs from 2 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv471681 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 32,100,466 | 32,332,547 |
| nsv471681 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 32,392,669 | 32,624,748 |
| nsv471681 | Submitted genomic | NCBI34 (hg16) | Primary Assembly | NC_000015.7 | Chr15 | 30,108,725 | 30,340,804 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv550239 | copy number loss | GM10967 | BAC aCGH | Probe signal intensity | 58 |
| nssv550240 | copy number loss | GM10969 | BAC aCGH | Probe signal intensity | 51 |
| nssv550241 | copy number gain | GM11523 | BAC aCGH | Probe signal intensity | 54 |
| nssv550242 | copy number loss | GM15728 | BAC aCGH | Probe signal intensity | 33 |
| nssv550243 | copy number gain | GM15733 | BAC aCGH | Probe signal intensity | 51 |
| nssv550244 | copy number loss | JK1058B | BAC aCGH | Probe signal intensity | 61 |
| nssv550245 | copy number loss | P86GA | BAC aCGH | Probe signal intensity | 50 |
| nssv549627 | copy number loss | GM10495B | BAC aCGH | Probe signal intensity | 45 |
| nssv549628 | copy number loss | GM10967 | BAC aCGH | Probe signal intensity | 58 |
| nssv549629 | copy number loss | GM10969 | BAC aCGH | Probe signal intensity | 51 |
| nssv549630 | copy number loss | JK1058B | BAC aCGH | Probe signal intensity | 61 |
| nssv549631 | copy number loss | JK1061 | BAC aCGH | Probe signal intensity | 51 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv550239 | Remapped | Pass | NT_187660.1:g.(?_4 418836)_(4593906_? )del | GRCh38.p12 | Second Pass | NT_187660.1 | Chr15|NT_1 87660.1 | 4,418,836 | 4,593,906 |
| nssv550240 | Remapped | Pass | NT_187660.1:g.(?_4 418836)_(4593906_? )del | GRCh38.p12 | Second Pass | NT_187660.1 | Chr15|NT_1 87660.1 | 4,418,836 | 4,593,906 |
| nssv550241 | Remapped | Pass | NT_187660.1:g.(?_4 418836)_(4593906_? )dup | GRCh38.p12 | Second Pass | NT_187660.1 | Chr15|NT_1 87660.1 | 4,418,836 | 4,593,906 |
| nssv550242 | Remapped | Pass | NT_187660.1:g.(?_4 418836)_(4593906_? )del | GRCh38.p12 | Second Pass | NT_187660.1 | Chr15|NT_1 87660.1 | 4,418,836 | 4,593,906 |
| nssv550243 | Remapped | Pass | NT_187660.1:g.(?_4 418836)_(4593906_? )dup | GRCh38.p12 | Second Pass | NT_187660.1 | Chr15|NT_1 87660.1 | 4,418,836 | 4,593,906 |
| nssv550244 | Remapped | Pass | NT_187660.1:g.(?_4 418836)_(4593906_? )del | GRCh38.p12 | Second Pass | NT_187660.1 | Chr15|NT_1 87660.1 | 4,418,836 | 4,593,906 |
| nssv550245 | Remapped | Pass | NT_187660.1:g.(?_4 418836)_(4593906_? )del | GRCh38.p12 | Second Pass | NT_187660.1 | Chr15|NT_1 87660.1 | 4,418,836 | 4,593,906 |
| nssv550239 | Remapped | Good | NW_011332701.1:g.( ?_4306384)_(450170 6_?)del | GRCh38.p12 | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 4,306,384 | 4,501,706 |
| nssv550240 | Remapped | Good | NW_011332701.1:g.( ?_4306384)_(450170 6_?)del | GRCh38.p12 | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 4,306,384 | 4,501,706 |
| nssv550241 | Remapped | Good | NW_011332701.1:g.( ?_4306384)_(450170 6_?)dup | GRCh38.p12 | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 4,306,384 | 4,501,706 |
| nssv550242 | Remapped | Good | NW_011332701.1:g.( ?_4306384)_(450170 6_?)del | GRCh38.p12 | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 4,306,384 | 4,501,706 |
| nssv550243 | Remapped | Good | NW_011332701.1:g.( ?_4306384)_(450170 6_?)dup | GRCh38.p12 | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 4,306,384 | 4,501,706 |
| nssv550244 | Remapped | Good | NW_011332701.1:g.( ?_4306384)_(450170 6_?)del | GRCh38.p12 | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 4,306,384 | 4,501,706 |
| nssv550245 | Remapped | Good | NW_011332701.1:g.( ?_4306384)_(450170 6_?)del | GRCh38.p12 | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 4,306,384 | 4,501,706 |
| nssv549627 | Remapped | Good | NC_000015.10:g.(?_ 32100466)_(3226001 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 32,100,466 | 32,260,010 |
| nssv549628 | Remapped | Good | NC_000015.10:g.(?_ 32100466)_(3226001 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 32,100,466 | 32,260,010 |
| nssv549629 | Remapped | Good | NC_000015.10:g.(?_ 32100466)_(3226001 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 32,100,466 | 32,260,010 |
| nssv549630 | Remapped | Good | NC_000015.10:g.(?_ 32100466)_(3226001 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 32,100,466 | 32,260,010 |
| nssv549631 | Remapped | Good | NC_000015.10:g.(?_ 32100466)_(3226001 0_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 32,100,466 | 32,260,010 |
| nssv550239 | Remapped | Perfect | NC_000015.10:g.(?_ 32133694)_(3233254 7_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 32,133,694 | 32,332,547 |
| nssv550240 | Remapped | Perfect | NC_000015.10:g.(?_ 32133694)_(3233254 7_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 32,133,694 | 32,332,547 |
| nssv550241 | Remapped | Perfect | NC_000015.10:g.(?_ 32133694)_(3233254 7_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 32,133,694 | 32,332,547 |
| nssv550242 | Remapped | Perfect | NC_000015.10:g.(?_ 32133694)_(3233254 7_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 32,133,694 | 32,332,547 |
| nssv550243 | Remapped | Perfect | NC_000015.10:g.(?_ 32133694)_(3233254 7_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 32,133,694 | 32,332,547 |
| nssv550244 | Remapped | Perfect | NC_000015.10:g.(?_ 32133694)_(3233254 7_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 32,133,694 | 32,332,547 |
| nssv550245 | Remapped | Perfect | NC_000015.10:g.(?_ 32133694)_(3233254 7_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 32,133,694 | 32,332,547 |
| nssv549627 | Remapped | Perfect | NC_000015.9:g.(?_3 2392669)_(32552211 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 32,392,669 | 32,552,211 |
| nssv549628 | Remapped | Perfect | NC_000015.9:g.(?_3 2392669)_(32552211 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 32,392,669 | 32,552,211 |
| nssv549629 | Remapped | Perfect | NC_000015.9:g.(?_3 2392669)_(32552211 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 32,392,669 | 32,552,211 |
| nssv549630 | Remapped | Perfect | NC_000015.9:g.(?_3 2392669)_(32552211 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 32,392,669 | 32,552,211 |
| nssv549631 | Remapped | Perfect | NC_000015.9:g.(?_3 2392669)_(32552211 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 32,392,669 | 32,552,211 |
| nssv550239 | Remapped | Perfect | NC_000015.9:g.(?_3 2425895)_(32624748 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 32,425,895 | 32,624,748 |
| nssv550240 | Remapped | Perfect | NC_000015.9:g.(?_3 2425895)_(32624748 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 32,425,895 | 32,624,748 |
| nssv550241 | Remapped | Perfect | NC_000015.9:g.(?_3 2425895)_(32624748 _?)dup | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 32,425,895 | 32,624,748 |
| nssv550242 | Remapped | Perfect | NC_000015.9:g.(?_3 2425895)_(32624748 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 32,425,895 | 32,624,748 |
| nssv550243 | Remapped | Perfect | NC_000015.9:g.(?_3 2425895)_(32624748 _?)dup | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 32,425,895 | 32,624,748 |
| nssv550244 | Remapped | Perfect | NC_000015.9:g.(?_3 2425895)_(32624748 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 32,425,895 | 32,624,748 |
| nssv550245 | Remapped | Perfect | NC_000015.9:g.(?_3 2425895)_(32624748 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 32,425,895 | 32,624,748 |
| nssv549627 | Submitted genomic | NC_000015.7:g.(?_3 0108725)_(30268267 _?)del | NCBI34 (hg16) | NC_000015.7 | Chr15 | 30,108,725 | 30,268,267 | ||
| nssv549628 | Submitted genomic | NC_000015.7:g.(?_3 0108725)_(30268267 _?)del | NCBI34 (hg16) | NC_000015.7 | Chr15 | 30,108,725 | 30,268,267 | ||
| nssv549629 | Submitted genomic | NC_000015.7:g.(?_3 0108725)_(30268267 _?)del | NCBI34 (hg16) | NC_000015.7 | Chr15 | 30,108,725 | 30,268,267 | ||
| nssv549630 | Submitted genomic | NC_000015.7:g.(?_3 0108725)_(30268267 _?)del | NCBI34 (hg16) | NC_000015.7 | Chr15 | 30,108,725 | 30,268,267 | ||
| nssv549631 | Submitted genomic | NC_000015.7:g.(?_3 0108725)_(30268267 _?)del | NCBI34 (hg16) | NC_000015.7 | Chr15 | 30,108,725 | 30,268,267 | ||
| nssv550239 | Submitted genomic | NC_000015.7:g.(?_3 0141951)_(30340804 _?)del | NCBI34 (hg16) | NC_000015.7 | Chr15 | 30,141,951 | 30,340,804 | ||
| nssv550240 | Submitted genomic | NC_000015.7:g.(?_3 0141951)_(30340804 _?)del | NCBI34 (hg16) | NC_000015.7 | Chr15 | 30,141,951 | 30,340,804 | ||
| nssv550241 | Submitted genomic | NC_000015.7:g.(?_3 0141951)_(30340804 _?)dup | NCBI34 (hg16) | NC_000015.7 | Chr15 | 30,141,951 | 30,340,804 | ||
| nssv550242 | Submitted genomic | NC_000015.7:g.(?_3 0141951)_(30340804 _?)del | NCBI34 (hg16) | NC_000015.7 | Chr15 | 30,141,951 | 30,340,804 | ||
| nssv550243 | Submitted genomic | NC_000015.7:g.(?_3 0141951)_(30340804 _?)dup | NCBI34 (hg16) | NC_000015.7 | Chr15 | 30,141,951 | 30,340,804 | ||
| nssv550244 | Submitted genomic | NC_000015.7:g.(?_3 0141951)_(30340804 _?)del | NCBI34 (hg16) | NC_000015.7 | Chr15 | 30,141,951 | 30,340,804 | ||
| nssv550245 | Submitted genomic | NC_000015.7:g.(?_3 0141951)_(30340804 _?)del | NCBI34 (hg16) | NC_000015.7 | Chr15 | 30,141,951 | 30,340,804 |