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dbVar

Database of genomic structural variation

nsv471699

Organism: Homo sapiens

Study:nstd32 (Sharp et al. 2005)
Variant Type:copy number variation
Method Type:BAC aCGH
Submitted on:NCBI34 (hg16)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:150,599

Publication(s):Sharp et al. 2005

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 267 SVs from 30 studies. See in: genome view

Remapped(Score: Perfect):21,945-172,543

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv471699	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NT_113796.3	Chr14\|NT_1 13796.3	21,945	172,543
nsv471699	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	143,364,761	143,515,359
nsv471699	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000001.7	Chr1	141,207,274	141,357,872

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv549634	copy number loss	GM10971	BAC aCGH	Probe signal intensity	56
nssv549635	copy number loss	GM17014A	BAC aCGH	Probe signal intensity	61

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv549634	Remapped	Perfect	NT_113796.3:g.(?_2 1945)_(172543_?)de l	GRCh38.p12	First Pass	NT_113796.3	Chr14\|NT_1 13796.3	21,945	172,543
nssv549635	Remapped	Perfect	NT_113796.3:g.(?_2 1945)_(172543_?)de l	GRCh38.p12	First Pass	NT_113796.3	Chr14\|NT_1 13796.3	21,945	172,543
nssv549634	Remapped	Perfect	NC_000001.10:g.(?_ 143364761)_(143515 359_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	143,364,761	143,515,359
nssv549635	Remapped	Perfect	NC_000001.10:g.(?_ 143364761)_(143515 359_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	143,364,761	143,515,359
nssv549634	Submitted genomic		NC_000001.7:g.(?_1 41207274)_(1413578 72_?)del	NCBI34 (hg16)		NC_000001.7	Chr1	141,207,274	141,357,872
nssv549635	Submitted genomic		NC_000001.7:g.(?_1 41207274)_(1413578 72_?)del	NCBI34 (hg16)		NC_000001.7	Chr1	141,207,274	141,357,872

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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