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dbVar

Database of genomic structural variation

nsv4727869

Organism: Homo sapiens

Study:nstd197 (Boujemaa et al. 2021)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:4,903

Publication(s):Boujemaa et al. 2021

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 403 SVs from 64 studies. See in: genome view

Remapped(Score: Perfect):99,808,172-99,813,074

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv4727869	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	99,808,172	99,813,074
nsv4727869	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000015.9	Chr15	100,348,377	100,353,279

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype
nssv16253465	copy number loss	Sequencing	Read depth	Breast cancer
nssv16253466	copy number loss	Sequencing	Read depth	Breast cancer

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16253465	Remapped	Perfect	NC_000015.10:g.998 08172_99808302del	GRCh38.p12	First Pass	NC_000015.10	Chr15	99,808,172	99,808,302
nssv16253466	Remapped	Perfect	NC_000015.10:g.998 08172_99813074del	GRCh38.p12	First Pass	NC_000015.10	Chr15	99,808,172	99,813,074
nssv16253465	Submitted genomic		NC_000015.9:g.1003 48377_100348507del	GRCh37 (hg19)		NC_000015.9	Chr15	100,348,377	100,348,507
nssv16253466	Submitted genomic		NC_000015.9:g.1003 48377_100353279del	GRCh37 (hg19)		NC_000015.9	Chr15	100,348,377	100,353,279

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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