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dbVar

Database of genomic structural variation

nsv4727996

Organism: Homo sapiens

Study:nstd197 (Boujemaa et al. 2021)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:22,988

Publication(s):Boujemaa et al. 2021

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 702 SVs from 77 studies. See in: genome view

Remapped(Score: Perfect):143,996,300-144,019,287

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv4727996	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	143,996,300	144,019,287
nsv4727996	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	144,917,453	144,940,440

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype
nssv16253710	copy number loss	Sequencing	Read depth	Breast cancer

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16253710	Remapped	Perfect	NC_000004.12:g.143 996300_144019287de l	GRCh38.p12	First Pass	NC_000004.12	Chr4	143,996,300	144,019,287
nssv16253710	Submitted genomic		NC_000004.11:g.144 917453_144940440de l	GRCh37 (hg19)		NC_000004.11	Chr4	144,917,453	144,940,440

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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