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dbVar

Database of genomic structural variation

nsv4728006

Organism: Homo sapiens

Study:nstd197 (Boujemaa et al. 2021)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:5,186

Publication(s):Boujemaa et al. 2021

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 144 SVs from 38 studies. See in: genome view

Remapped(Score: Perfect):175,959,970-175,965,155

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv4728006	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	175,959,970	175,965,155
nsv4728006	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	175,386,973	175,392,158

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype
nssv16253730	copy number loss	Sequencing	Read depth	Breast cancer
nssv16253731	copy number gain	Sequencing	Read depth	Breast cancer
nssv16253732	copy number gain	Sequencing	Read depth	Breast cancer
nssv16253738	copy number loss	Sequencing	Read depth	Breast cancer

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16253730	Remapped	Perfect	NC_000005.10:g.175 959970_175961434de l	GRCh38.p12	First Pass	NC_000005.10	Chr5	175,959,970	175,961,434
nssv16253731	Remapped	Perfect	NC_000005.10:g.175 959970_175961434du p	GRCh38.p12	First Pass	NC_000005.10	Chr5	175,959,970	175,961,434
nssv16253732	Remapped	Perfect	NC_000005.10:g.175 961052_175961434du p	GRCh38.p12	First Pass	NC_000005.10	Chr5	175,961,052	175,961,434
nssv16253738	Remapped	Perfect	NC_000005.10:g.175 961052_175965155de l	GRCh38.p12	First Pass	NC_000005.10	Chr5	175,961,052	175,965,155
nssv16253730	Submitted genomic		NC_000005.9:g.1753 86973_175388437del	GRCh37 (hg19)		NC_000005.9	Chr5	175,386,973	175,388,437
nssv16253731	Submitted genomic		NC_000005.9:g.1753 86973_175388437dup	GRCh37 (hg19)		NC_000005.9	Chr5	175,386,973	175,388,437
nssv16253732	Submitted genomic		NC_000005.9:g.1753 88055_175388437dup	GRCh37 (hg19)		NC_000005.9	Chr5	175,388,055	175,388,437
nssv16253738	Submitted genomic		NC_000005.9:g.1753 88055_175392158del	GRCh37 (hg19)		NC_000005.9	Chr5	175,388,055	175,392,158

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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