nsv4728897
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:4,191,599
- Description:GRCh37/hg19 5p15.33(chr5:113576-4305172)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 23903 SVs from 130 studies. See in: genome view
Overlapping variant regions from other studies: 23903 SVs from 130 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4728897 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 113,461 | 4,305,059 |
| nsv4728897 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 113,576 | 4,305,172 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv16255066 | copy number loss | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV001258846.1, VCV000979670.1 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16255066 | Remapped | Perfect | NC_000005.10:g.(?_ 113461)_(4305059_? )del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 113,461 | 4,305,059 |
| nssv16255066 | Submitted genomic | NC_000005.9:g.(?_1 13576)_(4305172_?) del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 113,576 | 4,305,172 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv16255066 | GRCh37: NC_000005.9:g.(?_113576)_(4305172_?)del | copy number loss | germline | not provided | Pathogenic | ClinVar | RCV001258846.1, VCV000979670.1 | 1 |