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dbVar

Database of genomic structural variation

nsv4769329

Organism: Homo sapiens

Study:nstd102 (Clinical Structural Variants)
Variant Type:copy number variation
Method Type:Multiple
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: Yes
Region Size:1,888,455

Description:GRCh37/hg19 3q26.33(chr3:180102701-181991155)x1 AND Anophthalmia/microphthalmia-esophageal atresia syndrome
Publication(s):Williamson et al. 2006

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 4045 SVs from 81 studies. See in: genome view

Remapped(Score: Perfect):180,384,913-182,273,367

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4769329	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	180,384,913	182,273,367
nsv4769329	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	180,102,701	181,991,155

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID	Copy number
nssv16297142	copy number loss	Multiple	Multiple	Anophthalmia/microphthalmia-esophageal atresia syndrome; MICROPHTHALMIA, SYNDROMIC 3; MCOPS3; Microphthalmia syndromic 3; SOX2-Related Eye Disorders	Pathogenic	ClinVar	RCV001267845.1, VCV000986754.1	1

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv16297142	Remapped	Perfect	NC_000003.12:g.(?_ 180384913)_(182273 367_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	180,384,913	182,273,367
nssv16297142	Submitted genomic		NC_000003.11:g.(?_ 180102701)_(181991 155_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	180,102,701	181,991,155

No validation data were submitted for this variant

Clinical Assertions

Variant Call ID	HGVS	Type	Allele Origin	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID	Copy number
nssv16297142	GRCh37: NC_000003.11:g.(?_180102701)_(181991155_?)del	copy number loss	germline	Anophthalmia/microphthalmia-esophageal atresia syndrome; MICROPHTHALMIA, SYNDROMIC 3; MCOPS3; Microphthalmia syndromic 3; SOX2-Related Eye Disorders	Pathogenic	ClinVar	RCV001267845.1, VCV000986754.1	1

No genotype data were submitted for this variant

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